Silicibacter lacuscaerulensis ITI-1157

J. Craig Venter Institute

Genome Size: 3.2 megabases, GC Content: 63.0%, Released Date: May 12, 2009 #18396

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACNX01000001
1.5 KB
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whole genome shotgun sequence
NZ_ACNX01000002
2.1 KB
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whole genome shotgun sequence
NZ_ACNX01000003
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000004
4.7 KB
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whole genome shotgun sequence
NZ_ACNX01000005
2.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000006
3.0 KB
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whole genome shotgun sequence
NZ_ACNX01000007
9.0 KB
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whole genome shotgun sequence
NZ_ACNX01000008
8.9 KB
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whole genome shotgun sequence
NZ_ACNX01000009
7.7 KB
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whole genome shotgun sequence
NZ_ACNX01000010
9.3 KB
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whole genome shotgun sequence
NZ_ACNX01000011
3.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000012
1.8 KB
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whole genome shotgun sequence
NZ_ACNX01000013
6.4 KB
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whole genome shotgun sequence
NZ_ACNX01000014
21.1 KB
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whole genome shotgun sequence
NZ_ACNX01000015
20.8 KB
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whole genome shotgun sequence
NZ_ACNX01000016
80.8 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000017
28.8 KB
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whole genome shotgun sequence
NZ_ACNX01000018
161.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000019
23.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000020
41.9 KB
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whole genome shotgun sequence
NZ_ACNX01000021
39.9 KB
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whole genome shotgun sequence
NZ_ACNX01000022
109.2 KB
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whole genome shotgun sequence
NZ_ACNX01000023
137.9 KB
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whole genome shotgun sequence
NZ_ACNX01000024
44.2 KB
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whole genome shotgun sequence
NZ_ACNX01000025
64.0 KB
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whole genome shotgun sequence
NZ_ACNX01000026
75.0 KB
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whole genome shotgun sequence
NZ_ACNX01000027
48.0 KB
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whole genome shotgun sequence
NZ_ACNX01000028
124.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000029
148.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000030
98.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000031
302.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000032
131.4 KB
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whole genome shotgun sequence
NZ_ACNX01000033
98.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000034
69.7 KB
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whole genome shotgun sequence
NZ_ACNX01000035
424.5 KB
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whole genome shotgun sequence
NZ_ACNX01000036
60.3 KB
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whole genome shotgun sequence
NZ_ACNX01000037
123.8 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000038
30.7 KB
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whole genome shotgun sequence
NZ_ACNX01000039
172.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000040
140.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000041
1.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000042
159.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000043
70.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000044
11.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000045
191.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000046
15.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNX01000047
99.6 KB
0 CDS

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Taxonomy

External Links

Silicibacter lacuscaerulensis ITI-1157

Search Genome

Sequences

PubMed Search for Silicibacter lacuscaerulensis ITI-1157

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