Sphingomonas sp. SKA58

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 63.2%, Released Date: April 28, 2006 #18401

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAQG01000001
519.0 KB
479 CDS

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whole genome shotgun sequence
NZ_AAQG01000002
371.0 KB
397 CDS

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whole genome shotgun sequence
NZ_AAQG01000003
275.0 KB
297 CDS

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whole genome shotgun sequence
NZ_AAQG01000004
231.0 KB
214 CDS

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whole genome shotgun sequence
NZ_AAQG01000005
221.4 KB
217 CDS

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whole genome shotgun sequence
NZ_AAQG01000006
169.5 KB
167 CDS

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whole genome shotgun sequence
NZ_AAQG01000007
165.7 KB
178 CDS

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whole genome shotgun sequence
NZ_AAQG01000008
147.2 KB
157 CDS

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whole genome shotgun sequence
NZ_AAQG01000009
124.2 KB
145 CDS

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whole genome shotgun sequence
NZ_AAQG01000010
115.0 KB
120 CDS

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whole genome shotgun sequence
NZ_AAQG01000011
112.1 KB
120 CDS

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whole genome shotgun sequence
NZ_AAQG01000012
98.9 KB
110 CDS

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whole genome shotgun sequence
NZ_AAQG01000013
97.0 KB
102 CDS

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whole genome shotgun sequence
NZ_AAQG01000014
94.7 KB
96 CDS

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whole genome shotgun sequence
NZ_AAQG01000015
90.5 KB
70 CDS

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whole genome shotgun sequence
NZ_AAQG01000016
85.3 KB
88 CDS

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whole genome shotgun sequence
NZ_AAQG01000017
84.0 KB
71 CDS

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whole genome shotgun sequence
NZ_AAQG01000018
71.3 KB
72 CDS

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whole genome shotgun sequence
NZ_AAQG01000019
67.6 KB
74 CDS

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whole genome shotgun sequence
NZ_AAQG01000020
66.6 KB
79 CDS

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whole genome shotgun sequence
NZ_AAQG01000021
66.4 KB
69 CDS

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whole genome shotgun sequence
NZ_AAQG01000022
66.4 KB
57 CDS

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whole genome shotgun sequence
NZ_AAQG01000023
66.3 KB
63 CDS

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whole genome shotgun sequence
NZ_AAQG01000024
53.2 KB
60 CDS

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whole genome shotgun sequence
NZ_AAQG01000025
51.6 KB
45 CDS

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whole genome shotgun sequence
NZ_AAQG01000026
41.2 KB
58 CDS

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whole genome shotgun sequence
NZ_AAQG01000027
37.2 KB
40 CDS

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whole genome shotgun sequence
NZ_AAQG01000028
36.9 KB
37 CDS

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whole genome shotgun sequence
NZ_AAQG01000029
34.7 KB
30 CDS

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whole genome shotgun sequence
NZ_AAQG01000030
34.3 KB
33 CDS

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whole genome shotgun sequence
NZ_AAQG01000031
33.1 KB
32 CDS

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whole genome shotgun sequence
NZ_AAQG01000032
30.8 KB
30 CDS

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whole genome shotgun sequence
NZ_AAQG01000033
19.8 KB
17 CDS

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whole genome shotgun sequence
NZ_AAQG01000034
18.2 KB
22 CDS

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whole genome shotgun sequence
NZ_AAQG01000035
14.9 KB
18 CDS

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whole genome shotgun sequence
NZ_AAQG01000036
13.8 KB
18 CDS

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whole genome shotgun sequence
NZ_AAQG01000037
8.0 KB
5 CDS

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whole genome shotgun sequence
NZ_AAQG01000038
7.9 KB
9 CDS

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whole genome shotgun sequence
NZ_AAQG01000039
6.3 KB
9 CDS

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whole genome shotgun sequence
NZ_AAQG01000040
5.0 KB
5 CDS

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whole genome shotgun sequence
NZ_AAQG01000041
2.5 KB
4 CDS

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Taxonomy

External Links

Sphingomonas sp. SKA58

Search Genome

Sequences

PubMed Search for Sphingomonas sp. SKA58

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