Spirochaeta thermophila DSM 6578

DOE Joint Genome Institute

Genome Size: 2.5 megabases, #20661

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

Sther_Contig120, whole genome shotgun sequence
AEOG01000001
397.9 KB
340 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig118, whole genome shotgun sequence
AEOG01000002
300.0 KB
271 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig119, whole genome shotgun sequence
AEOG01000003
298.7 KB
276 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig117, whole genome shotgun sequence
AEOG01000004
218.6 KB
203 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig113, whole genome shotgun sequence
AEOG01000005
128.1 KB
140 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig116, whole genome shotgun sequence
AEOG01000006
124.8 KB
133 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig115, whole genome shotgun sequence
AEOG01000007
115.1 KB
112 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig114, whole genome shotgun sequence
AEOG01000008
106.5 KB
95 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig112, whole genome shotgun sequence
AEOG01000009
95.9 KB
82 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig111, whole genome shotgun sequence
AEOG01000010
94.8 KB
87 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig110, whole genome shotgun sequence
AEOG01000011
93.3 KB
92 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig109, whole genome shotgun sequence
AEOG01000012
73.4 KB
68 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig107, whole genome shotgun sequence
AEOG01000013
66.8 KB
68 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig106, whole genome shotgun sequence
AEOG01000014
65.5 KB
63 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig108, whole genome shotgun sequence
AEOG01000015
57.0 KB
67 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig105, whole genome shotgun sequence
AEOG01000016
52.6 KB
51 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig104, whole genome shotgun sequence
AEOG01000017
41.9 KB
36 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig103, whole genome shotgun sequence
AEOG01000018
34.6 KB
32 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig102, whole genome shotgun sequence
AEOG01000019
21.7 KB
22 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig101, whole genome shotgun sequence
AEOG01000020
20.5 KB
15 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig100, whole genome shotgun sequence
AEOG01000021
12.2 KB
12 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig98, whole genome shotgun sequence
AEOG01000022
12.1 KB
10 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig99, whole genome shotgun sequence
AEOG01000023
11.6 KB
11 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig97, whole genome shotgun sequence
AEOG01000024
11.1 KB
12 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig96, whole genome shotgun sequence
AEOG01000025
7.5 KB
7 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig95, whole genome shotgun sequence
AEOG01000026
5.5 KB
4 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig94, whole genome shotgun sequence
AEOG01000027
2.1 KB
3 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig90, whole genome shotgun sequence
AEOG01000028
1.9 KB
4 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig93, whole genome shotgun sequence
AEOG01000029
1.9 KB
2 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig92, whole genome shotgun sequence
AEOG01000030
1.8 KB
2 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig91, whole genome shotgun sequence
AEOG01000031
1.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig82, whole genome shotgun sequence
AEOG01000032
1.3 KB
3 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig89, whole genome shotgun sequence
AEOG01000033
1.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig87, whole genome shotgun sequence
AEOG01000034
1.0 KB
3 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig84, whole genome shotgun sequence
AEOG01000035
1.0 KB
1 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig88, whole genome shotgun sequence
AEOG01000036
951 bytes
2 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig85, whole genome shotgun sequence
AEOG01000037
914 bytes
2 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig76, whole genome shotgun sequence
AEOG01000038
882 bytes
1 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig74, whole genome shotgun sequence
AEOG01000039
799 bytes
2 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig81, whole genome shotgun sequence
AEOG01000040
765 bytes
1 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig86, whole genome shotgun sequence
AEOG01000041
724 bytes
1 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig83, whole genome shotgun sequence
AEOG01000042
707 bytes
2 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig69, whole genome shotgun sequence
AEOG01000043
648 bytes
1 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig73, whole genome shotgun sequence
AEOG01000044
609 bytes
2 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig80, whole genome shotgun sequence
AEOG01000045
590 bytes
1 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig78, whole genome shotgun sequence
AEOG01000046
556 bytes
1 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig77, whole genome shotgun sequence
AEOG01000047
551 bytes
0 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig68, whole genome shotgun sequence
AEOG01000048
543 bytes
1 CDS

Table view
Circular View
Artemis Viewer

Sther_Contig79, whole genome shotgun sequence
AEOG01000049
536 bytes
1 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Spirochaeta thermophila DSM 6578

Search Genome

Sequences

PubMed Search for Spirochaeta thermophila DSM 6578

Related Genomes