Spirosoma linguale DSM 74

US DOE Joint Genome Institute (JGI-PGF) , NCBI , US DOE Joint Genome Institute, USA, Walnut Creek

Genome Size: 8.52 megabases, GC Content: 50.1%, Released Date: Jan. 13, 2010 #17458

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_013730
7.7 MB
6524 CDS

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plasmid pSLIN01
NC_013731
185.0 KB
177 CDS

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plasmid pSLIN02
NC_013732
143.5 KB
142 CDS

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plasmid pSLIN03
NC_013733
35.6 KB
40 CDS

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plasmid pSLIN04
NC_013734
9.7 KB
14 CDS

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plasmid pSLIN05
NC_013735
8.4 KB
12 CDS

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plasmid pSLIN06
NC_013736
7.5 KB
10 CDS

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plasmid pSLIN07
NC_013737
7.1 KB
11 CDS

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plasmid pSLIN08
NC_013738
5.9 KB
8 CDS

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Taxonomy

External Links

Spirosoma linguale DSM 74

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Sequences

PubMed Search for Spirosoma linguale DSM 74

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