Staphylococcus aureus subsp. aureus 132

Universidad Pública de Navarra

Genome Size: 2.0 megabases, Released Date: July 16, 2009 #18413

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACOT01000001
129.0 KB
111 CDS

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whole genome shotgun sequence
NZ_ACOT01000002
2.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ACOT01000003
792 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACOT01000004
4.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACOT01000005
430 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACOT01000006
95.6 KB
86 CDS

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whole genome shotgun sequence
NZ_ACOT01000007
352 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACOT01000008
144.8 KB
119 CDS

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whole genome shotgun sequence
NZ_ACOT01000009
498 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACOT01000010
24.1 KB
20 CDS

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whole genome shotgun sequence
NZ_ACOT01000011
3.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ACOT01000012
824 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACOT01000013
118.6 KB
132 CDS

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whole genome shotgun sequence
NZ_ACOT01000014
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACOT01000015
51.6 KB
47 CDS

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whole genome shotgun sequence
NZ_ACOT01000016
3.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ACOT01000017
2.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ACOT01000018
38.1 KB
37 CDS

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whole genome shotgun sequence
NZ_ACOT01000019
50.2 KB
46 CDS

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whole genome shotgun sequence
NZ_ACOT01000020
3.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ACOT01000021
4.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACOT01000022
67.3 KB
77 CDS

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whole genome shotgun sequence
NZ_ACOT01000023
124.6 KB
121 CDS

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whole genome shotgun sequence
NZ_ACOT01000024
41.2 KB
36 CDS

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whole genome shotgun sequence
NZ_ACOT01000025
250 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACOT01000026
467.2 KB
481 CDS

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whole genome shotgun sequence
NZ_ACOT01000027
98.4 KB
99 CDS

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whole genome shotgun sequence
NZ_ACOT01000028
15.4 KB
16 CDS

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whole genome shotgun sequence
NZ_ACOT01000029
12.9 KB
10 CDS

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whole genome shotgun sequence
NZ_ACOT01000030
336.9 KB
328 CDS

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whole genome shotgun sequence
NZ_ACOT01000031
85.8 KB
67 CDS

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whole genome shotgun sequence
NZ_ACOT01000032
16.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ACOT01000033
5.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ACOT01000034
18.6 KB
19 CDS

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whole genome shotgun sequence
NZ_ACOT01000035
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACOT01000036
51.5 KB
48 CDS

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whole genome shotgun sequence
NZ_ACOT01000037
66.7 KB
64 CDS

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whole genome shotgun sequence
NZ_ACOT01000038
101.9 KB
127 CDS

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whole genome shotgun sequence
NZ_ACOT01000039
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_ACOT01000040
106.6 KB
98 CDS

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whole genome shotgun sequence
NZ_ACOT01000041
19.2 KB
16 CDS

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whole genome shotgun sequence
NZ_ACOT01000042
109.4 KB
124 CDS

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whole genome shotgun sequence
NZ_ACOT01000043
45.6 KB
46 CDS

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whole genome shotgun sequence
NZ_ACOT01000044
141.2 KB
133 CDS

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whole genome shotgun sequence
NZ_ACOT01000045
72.6 KB
63 CDS

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whole genome shotgun sequence
NZ_ACOT01000046
71.6 KB
68 CDS

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References

Relevant role of FnBPs in Staphylococcus aureus biofilm associated foreign-body infections
Vergara-Irigaray,M., Valle,J., Merino,N., Latasa,C., Garcia,B., Ruiz de Los Mozos,I., Solano,C., Toledo-Arana,A., Penades,J.R. and Lasa,I. Infect. Immun. (2009) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Staphylococcus aureus subsp. aureus 132

Search Genome

Sequences

References

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