Staphylococcus aureus ED98

NCBI

Genome Size: 2.82 megabases, Released Date: Oct. 27, 2009 #17461

Completed genome

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Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

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Sequences

Staphylococcus aureus subsp. aureus ED98, complete genome
NC_013450
2.7 MB
2661 CDS

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Staphylococcus aureus subsp. aureus ED98 plasmid pAVX
NC_013453
16.9 KB
23 CDS

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Staphylococcus aureus subsp. aureus ED98 plasmid pAVY
NC_013451
1.4 KB
2 CDS

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Staphylococcus aureus subsp. aureus ED98 plasmid pT181
NC_013452
4.3 KB
3 CDS

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References

Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus
Lowder,B.V., Guinane,C.M., Ben Zakour,N.L., Weinert,L.A., Conway-Morris,A., Cartwright,R.A., Simpson,A.J., Rambaut,A., Nubel,U. and Fitzgerald,J.R. Proc. Natl. Acad. Sci. U.S.A. 106 (46), 19545-19550 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Staphylococcus aureus ED98

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Sequences

References

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