Staphylococcus aureus subsp. aureus JKD6159

University of Melbourne, Australia

Genome Size: 2.821 megabases, Released Date: Aug. 6, 2010 #20030

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP002114
2.7 MB
2555 CDS

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plasmid pSaa6159
CP002115
20.2 KB
22 CDS

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References

Complete Genome Sequence of Staphylococcus aureus Strain JKD6159, a Unique Australian Clone of ST93-IV Community Methicillin-Resistant Staphylococcus aureus
Chua,K., Seemann,T., Harrison,P.F., Davies,J.K., Coutts,S.J., Chen,H., Haring,V., Moore,R., Howden,B.P. and Stinear,T.P. J. Bacteriol. 192 (20), 5556-5557 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Staphylococcus aureus subsp. aureus JKD6159

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Sequences

References

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