Staphylococcus aureus subsp. aureus Mu50-omega

Juntendo Univ.

GC Content: 32.9%, Released Date: Jan. 12, 2009 #18420

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

sequence, whole genome shotgun sequence
NZ_BABM01000001
2.7 MB
2680 CDS

Table view
Circular View
Artemis Viewer

References

Contribution of vraSR and graSR point mutations to vancomycin resistance in vancomycin-intermediate Staphylococcus aureus
Cui,L., Neoh,H.M., Shoji,M. and Hiramatsu,K. Antimicrob. Agents Chemother. 53 (3), 1231-1234 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Staphylococcus aureus subsp. aureus Mu50-omega

Search Genome

Sequences

References

Related Genomes