Staphylococcus aureus subsp. aureus N315

Juntendo Univ. , NITE

Genome Size: 2.82 megabases, GC Content: 32.8%, Released Date: June 22, 2001 #17469

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_002745
2.7 MB
2583 CDS

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plasmid pN315
NC_003140
24.1 KB
31 CDS

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References

Whole genome sequencing of meticillin-resistant Staphylococcus aureus
Kuroda,M., Ohta,T., Uchiyama,I., Baba,T., Yuzawa,H., Kobayashi,I., Cui,L., Oguchi,A., Aoki,K., Nagai,Y., Lian,J., Ito,T., Kanamori,M., Matsumaru,H., Maruyama,A., Murakami,H., Hosoyama,A., Mizutani-Ui,Y., Takahashi,N.K., Sawano,T., Inoue,R., Kaito,C., Sekimizu,K., Hirakawa,H., Kuhara,S., Goto,S., Yabuzaki,J., Kanehisa,M., Yamashita,A., Oshima,K., Furuya,K., Yoshino,C., Shiba,T., Hattori,M., Ogasawara,N., Hayashi,H. and Hiramatsu,K. Lancet 357 (9264), 1225-1240 (2001)
PubMed, PubGet, HubMed

Taxonomy

External Links

Staphylococcus aureus subsp. aureus N315

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Sequences

References

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