Staphylococcus aureus subsp. aureus ST398

University Medical Centre Utrecht

Genome Size: 2.9128 megabases, GC Content: 32.9%, Released Date: Jan. 7, 2010 #20031

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome, isolate SO385
AM990992
2.7 MB
2699 CDS

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pS0385-1 plasmid, isolate SO385
AM990993
5.1 KB
4 CDS

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pS0385-2 plasmid, isolate SO385
AM990994
4.3 KB
5 CDS

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pS0385-3 plasmid, isolate SO385
AM990995
3.1 KB
2 CDS

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References

Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis
Schijffelen,M.J., Boel,C.H., van Strijp,J.A. and Fluit,A.C. BMC Genomics 11 (1), 376 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Staphylococcus aureus subsp. aureus ST398

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Sequences

References

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