Staphylococcus aureus subsp. aureus str. JKD6008

Monash University

Genome Size: 2.9 megabases, GC Content: 32.7%, Released Date: July 10, 2008 #20034

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP002120
2.8 MB
2680 CDS

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References

Complete genome sequence of Staphylococcus aureus strain JKD6008, an ST239 clone of methicillin-resistant Staphylococcus aureus with intermediate-level vancomycin resistance
Howden,B.P., Seemann,T., Harrison,P.F., McEvoy,C.R., Stanton,J.A., Rand,C.J., Mason,C.W., Jensen,S.O., Firth,N., Davies,J.K., Johnson,P.D. and Stinear,T.P. J. Bacteriol. 192 (21), 5848-5849 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Staphylococcus aureus subsp. aureus str. JKD6008

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Sequences

References

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