Staphylococcus aureus subsp. aureus TW20

The Wellcome Trust Sanger Institute

Genome Size: 3.033 megabases, GC Content: 32.8%, Released Date: Nov. 25, 2009 #20033

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

complete genome
FN433596
2.9 MB
2836 CDS

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plasmid pTW20_1
FN433597
28.9 KB
31 CDS

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plasmid pTW20_2
FN433598
2.9 KB
2 CDS

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References

Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW)
Holden,M.T., Lindsay,J.A., Corton,C., Quail,M.A., Cockfield,J.D., Pathak,S., Batra,R., Parkhill,J., Bentley,S.D. and Edgeworth,J.D. J. Bacteriol. 192 (3), 888-892 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Staphylococcus aureus subsp. aureus TW20

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Sequences

References

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