Staphylococcus epidermidis BCM-HMP0060

Baylor College of Medicine

GC Content: 31.9%, Released Date: March 17, 2009 #18429

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACHE01000001
23.2 KB
26 CDS

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whole genome shotgun sequence
NZ_ACHE01000002
922 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000003
10.3 KB
14 CDS

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whole genome shotgun sequence
NZ_ACHE01000004
19.0 KB
19 CDS

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whole genome shotgun sequence
NZ_ACHE01000005
590 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000006
517 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000007
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000008
239 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000009
241 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000010
241 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACHE01000011
205 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000012
217 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACHE01000013
237 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACHE01000014
215 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACHE01000015
803 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000016
240 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000017
38.6 KB
37 CDS

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whole genome shotgun sequence
NZ_ACHE01000018
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000019
52.7 KB
56 CDS

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whole genome shotgun sequence
NZ_ACHE01000020
54.6 KB
52 CDS

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whole genome shotgun sequence
NZ_ACHE01000021
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACHE01000022
64.7 KB
64 CDS

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whole genome shotgun sequence
NZ_ACHE01000023
5.1 KB
6 CDS

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whole genome shotgun sequence
NZ_ACHE01000024
16.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ACHE01000025
83.3 KB
91 CDS

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whole genome shotgun sequence
NZ_ACHE01000026
22.4 KB
25 CDS

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whole genome shotgun sequence
NZ_ACHE01000027
9.5 KB
11 CDS

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whole genome shotgun sequence
NZ_ACHE01000028
13.6 KB
10 CDS

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whole genome shotgun sequence
NZ_ACHE01000029
94.7 KB
109 CDS

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whole genome shotgun sequence
NZ_ACHE01000030
48.9 KB
61 CDS

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whole genome shotgun sequence
NZ_ACHE01000031
19.2 KB
13 CDS

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whole genome shotgun sequence
NZ_ACHE01000032
15.7 KB
14 CDS

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whole genome shotgun sequence
NZ_ACHE01000033
2.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ACHE01000034
19.4 KB
24 CDS

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whole genome shotgun sequence
NZ_ACHE01000035
71.6 KB
109 CDS

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whole genome shotgun sequence
NZ_ACHE01000036
15.5 KB
14 CDS

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whole genome shotgun sequence
NZ_ACHE01000037
59.3 KB
56 CDS

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whole genome shotgun sequence
NZ_ACHE01000038
204.9 KB
195 CDS

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whole genome shotgun sequence
NZ_ACHE01000039
43.4 KB
37 CDS

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whole genome shotgun sequence
NZ_ACHE01000040
57.0 KB
56 CDS

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whole genome shotgun sequence
NZ_ACHE01000041
129.1 KB
99 CDS

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whole genome shotgun sequence
NZ_ACHE01000042
64.4 KB
71 CDS

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whole genome shotgun sequence
NZ_ACHE01000043
29.1 KB
21 CDS

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whole genome shotgun sequence
NZ_ACHE01000044
20.1 KB
21 CDS

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whole genome shotgun sequence
NZ_ACHE01000045
22.0 KB
20 CDS

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whole genome shotgun sequence
NZ_ACHE01000046
27.7 KB
18 CDS

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whole genome shotgun sequence
NZ_ACHE01000047
76.3 KB
59 CDS

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whole genome shotgun sequence
NZ_ACHE01000048
34.3 KB
33 CDS

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whole genome shotgun sequence
NZ_ACHE01000049
5.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ACHE01000050
7.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACHE01000051
273 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACHE01000052
292 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000053
29.2 KB
34 CDS

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whole genome shotgun sequence
NZ_ACHE01000054
727 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACHE01000055
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000056
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ACHE01000057
3.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACHE01000058
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000059
537 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACHE01000060
35.5 KB
30 CDS

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whole genome shotgun sequence
NZ_ACHE01000061
51.5 KB
64 CDS

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whole genome shotgun sequence
NZ_ACHE01000062
60.5 KB
54 CDS

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whole genome shotgun sequence
NZ_ACHE01000063
5.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ACHE01000064
8.2 KB
8 CDS

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whole genome shotgun sequence
NZ_ACHE01000065
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ACHE01000066
2.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ACHE01000067
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ACHE01000068
20.3 KB
22 CDS

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whole genome shotgun sequence
NZ_ACHE01000069
4.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ACHE01000070
7.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ACHE01000071
9.2 KB
9 CDS

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whole genome shotgun sequence
NZ_ACHE01000072
9.6 KB
11 CDS

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whole genome shotgun sequence
NZ_ACHE01000073
5.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ACHE01000074
22.2 KB
27 CDS

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whole genome shotgun sequence
NZ_ACHE01000075
9.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ACHE01000076
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000077
84.8 KB
73 CDS

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whole genome shotgun sequence
NZ_ACHE01000078
21.6 KB
23 CDS

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whole genome shotgun sequence
NZ_ACHE01000079
13.1 KB
9 CDS

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whole genome shotgun sequence
NZ_ACHE01000080
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ACHE01000081
15.1 KB
16 CDS

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whole genome shotgun sequence
NZ_ACHE01000082
16.9 KB
14 CDS

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whole genome shotgun sequence
NZ_ACHE01000083
2.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ACHE01000084
3.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ACHE01000085
16.0 KB
15 CDS

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whole genome shotgun sequence
NZ_ACHE01000086
59.1 KB
55 CDS

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whole genome shotgun sequence
NZ_ACHE01000087
18.4 KB
18 CDS

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whole genome shotgun sequence
NZ_ACHE01000088
11.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ACHE01000089
41.5 KB
43 CDS

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whole genome shotgun sequence
NZ_ACHE01000090
93.9 KB
88 CDS

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whole genome shotgun sequence
NZ_ACHE01000091
5.7 KB
6 CDS

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whole genome shotgun sequence
NZ_ACHE01000092
20.3 KB
18 CDS

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whole genome shotgun sequence
NZ_ACHE01000093
58.9 KB
62 CDS

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whole genome shotgun sequence
NZ_ACHE01000094
25.2 KB
28 CDS

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whole genome shotgun sequence
NZ_ACHE01000095
24.7 KB
33 CDS

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whole genome shotgun sequence
NZ_ACHE01000096
68.5 KB
81 CDS

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whole genome shotgun sequence
NZ_ACHE01000097
6.2 KB
7 CDS

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whole genome shotgun sequence
NZ_ACHE01000098
366 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000099
5.9 KB
7 CDS

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whole genome shotgun sequence
NZ_ACHE01000100
959 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000101
232 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACHE01000102
257 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACHE01000103
556 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACHE01000104
493 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACHE01000105
257 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000106
651 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000107
33.2 KB
33 CDS

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whole genome shotgun sequence
NZ_ACHE01000108
47.6 KB
50 CDS

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whole genome shotgun sequence
NZ_ACHE01000109
217 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACHE01000110
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000111
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ACHE01000112
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACHE01000113
379 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACHE01000114
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ACHE01000115
455 bytes
1 CDS

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Taxonomy

External Links

Staphylococcus epidermidis BCM-HMP0060

Search Genome

Sequences

PubMed Search for Staphylococcus epidermidis BCM-HMP0060

Related Genomes