Staphylococcus epidermidis SK135

J. Craig Venter Institute

Genome Size: 2.5 megabases, GC Content: 32.2%, Released Date: Dec. 15, 2009 #20692

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ADEY01000001
5.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ADEY01000002
6.1 KB
8 CDS

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whole genome shotgun sequence
NZ_ADEY01000003
112.9 KB
107 CDS

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whole genome shotgun sequence
NZ_ADEY01000004
722 bytes
2 CDS

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whole genome shotgun sequence
NZ_ADEY01000005
2.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ADEY01000006
94.1 KB
90 CDS

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whole genome shotgun sequence
NZ_ADEY01000007
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ADEY01000008
568 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADEY01000009
108.1 KB
108 CDS

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whole genome shotgun sequence
NZ_ADEY01000010
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ADEY01000011
33.5 KB
40 CDS

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whole genome shotgun sequence
NZ_ADEY01000012
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ADEY01000013
182.6 KB
182 CDS

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whole genome shotgun sequence
NZ_ADEY01000014
4.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ADEY01000015
352.3 KB
367 CDS

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whole genome shotgun sequence
NZ_ADEY01000016
48.4 KB
39 CDS

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whole genome shotgun sequence
NZ_ADEY01000017
270.4 KB
289 CDS

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whole genome shotgun sequence
NZ_ADEY01000018
834 bytes
2 CDS

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whole genome shotgun sequence
NZ_ADEY01000019
2.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ADEY01000020
5.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ADEY01000021
733.6 KB
683 CDS

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whole genome shotgun sequence
NZ_ADEY01000022
91.8 KB
88 CDS

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whole genome shotgun sequence
NZ_ADEY01000023
77.4 KB
74 CDS

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whole genome shotgun sequence
NZ_ADEY01000024
4.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ADEY01000025
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ADEY01000026
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ADEY01000027
687 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADEY01000028
1.9 KB
1 CDS

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whole genome shotgun sequence
NZ_ADEY01000029
45.5 KB
53 CDS

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whole genome shotgun sequence
NZ_ADEY01000030
873 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADEY01000031
282 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADEY01000032
262.9 KB
223 CDS

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whole genome shotgun sequence
NZ_ADEY01000033
1.3 KB
1 CDS

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Taxonomy

External Links

Staphylococcus epidermidis SK135

Search Genome

Sequences

PubMed Search for Staphylococcus epidermidis SK135

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