Staphylococcus haemolyticus JCSC1435

NITE

Genome Size: 2.71 megabases, GC Content: 32.8%, Released Date: June 30, 2005 #17477

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_007168
2.6 MB
2676 CDS

Table view
Circular View
Artemis Viewer

plasmid pSHaeA
NC_007169
2.2 KB
3 CDS

Table view
Circular View
Artemis Viewer

plasmid pSHaeB
NC_007170
2.3 KB
2 CDS

Table view
Circular View
Artemis Viewer

plasmid pSHaeC
NC_007171
8.0 KB
11 CDS

Table view
Circular View
Artemis Viewer

References

Whole-genome sequencing of staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species
Takeuchi,F., Watanabe,S., Baba,T., Yuzawa,H., Ito,T., Morimoto,Y., Kuroda,M., Cui,L., Takahashi,M., Ankai,A., Baba,S., Fukui,S., Lee,J.C. and Hiramatsu,K. J. Bacteriol. 187 (21), 7292-7308 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Staphylococcus haemolyticus JCSC1435

Search Genome

Sequences

References

Related Genomes