Staphylococcus lugdunensis M23590

Baylor College of Medicine

Released Date: Dec. 27, 2010 #20694

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00001, whole genome shotgun sequence
NZ_AEQA01000001
95.6 KB
94 CDS

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contig00002, whole genome shotgun sequence
NZ_AEQA01000002
57.5 KB
50 CDS

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contig00003, whole genome shotgun sequence
NZ_AEQA01000003
516.3 KB
509 CDS

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contig00004, whole genome shotgun sequence
NZ_AEQA01000004
28.5 KB
29 CDS

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contig00005, whole genome shotgun sequence
NZ_AEQA01000005
132.1 KB
127 CDS

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contig00006, whole genome shotgun sequence
NZ_AEQA01000006
51.1 KB
47 CDS

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contig00007, whole genome shotgun sequence
NZ_AEQA01000007
1.7 KB
2 CDS

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contig00008, whole genome shotgun sequence
NZ_AEQA01000008
262.8 KB
276 CDS

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contig00009, whole genome shotgun sequence
NZ_AEQA01000009
29.3 KB
35 CDS

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contig00010, whole genome shotgun sequence
NZ_AEQA01000010
58.2 KB
50 CDS

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contig00011, whole genome shotgun sequence
NZ_AEQA01000011
231.9 KB
247 CDS

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contig00012, whole genome shotgun sequence
NZ_AEQA01000012
57.5 KB
57 CDS

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contig00013, whole genome shotgun sequence
NZ_AEQA01000013
83.7 KB
77 CDS

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contig00014, whole genome shotgun sequence
NZ_AEQA01000014
191.7 KB
171 CDS

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contig00015, whole genome shotgun sequence
NZ_AEQA01000015
20.2 KB
22 CDS

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contig00016, whole genome shotgun sequence
NZ_AEQA01000016
233.4 KB
226 CDS

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contig00017, whole genome shotgun sequence
NZ_AEQA01000017
167.9 KB
159 CDS

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contig00018, whole genome shotgun sequence
NZ_AEQA01000018
57.0 KB
59 CDS

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contig00019, whole genome shotgun sequence
NZ_AEQA01000019
54.0 KB
54 CDS

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contig00020, whole genome shotgun sequence
NZ_AEQA01000020
74.5 KB
83 CDS

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contig00021, whole genome shotgun sequence
NZ_AEQA01000021
7.3 KB
5 CDS

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contig00022, whole genome shotgun sequence
NZ_AEQA01000022
44.5 KB
41 CDS

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contig00023, whole genome shotgun sequence
NZ_AEQA01000023
3.0 KB
0 CDS

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contig00024, whole genome shotgun sequence
NZ_AEQA01000024
1.6 KB
0 CDS

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contig00025, whole genome shotgun sequence
NZ_AEQA01000025
607 bytes
1 CDS

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Taxonomy

External Links

Staphylococcus lugdunensis M23590

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Sequences

PubMed Search for Staphylococcus lugdunensis M23590

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