Streptococcus downei F0415

J. Craig Venter Institute

Genome Size: 2.2 megabases, Released Date: Nov. 4, 2010 #20698

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

ctg1126915017558, whole genome shotgun sequence
NZ_AEKN01000001
115.7 KB
220 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017554, whole genome shotgun sequence
NZ_AEKN01000002
12.7 KB
14 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017564, whole genome shotgun sequence
NZ_AEKN01000003
452.0 KB
932 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017549, whole genome shotgun sequence
NZ_AEKN01000004
35.6 KB
78 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017548, whole genome shotgun sequence
NZ_AEKN01000005
17.5 KB
42 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017563, whole genome shotgun sequence
NZ_AEKN01000006
402.7 KB
848 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017560, whole genome shotgun sequence
NZ_AEKN01000007
163.4 KB
334 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017553, whole genome shotgun sequence
NZ_AEKN01000008
31.7 KB
42 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017550, whole genome shotgun sequence
NZ_AEKN01000009
36.2 KB
74 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017556, whole genome shotgun sequence
NZ_AEKN01000010
91.6 KB
216 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017559, whole genome shotgun sequence
NZ_AEKN01000011
4.6 KB
0 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017561, whole genome shotgun sequence
NZ_AEKN01000012
156.9 KB
268 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017562, whole genome shotgun sequence
NZ_AEKN01000013
359.3 KB
670 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017555, whole genome shotgun sequence
NZ_AEKN01000014
12.6 KB
36 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017551, whole genome shotgun sequence
NZ_AEKN01000015
50.8 KB
112 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017557, whole genome shotgun sequence
NZ_AEKN01000016
212.6 KB
442 CDS

Table view
Circular View
Artemis Viewer

ctg1126915017552, whole genome shotgun sequence
NZ_AEKN01000017
31.0 KB
80 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Streptococcus downei F0415

Search Genome

Sequences

PubMed Search for Streptococcus downei F0415

Related Genomes