Streptococcus equi subsp. zooepidemicus BHS5

Veterinary Pathology, University of Liverpool, UNITED KINGDOM

Genome Size: 2.1 megabases, #20699

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

whole genome shotgun sequence, strain BHS5, scaffold01
CABY01000001
56.9 KB
0 CDS

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whole genome shotgun sequence, strain BHS5, scaffold02
CABY01000002
56.9 KB
0 CDS

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whole genome shotgun sequence, strain BHS5, scaffold03
CABY01000003
221.4 KB
0 CDS

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whole genome shotgun sequence, strain BHS5, scaffold04
CABY01000004
300.7 KB
0 CDS

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whole genome shotgun sequence, strain BHS5, scaffold05
CABY01000005
1.0 MB
0 CDS

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whole genome shotgun sequence, strain BHS5, scaffold06
CABY01000006
136.8 KB
0 CDS

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whole genome shotgun sequence, strain BHS5, scaffold07
CABY01000007
41.1 KB
0 CDS

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whole genome shotgun sequence, strain BHS5, scaffold08
CABY01000008
125.4 KB
0 CDS

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whole genome shotgun sequence, strain BHS5, scaffold09
CABY01000009
68.7 KB
0 CDS

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whole genome shotgun sequence, strain BHS5, scaffold10
CABY01000010
3.3 KB
0 CDS

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whole genome shotgun sequence, strain BHS5, scaffold11
CABY01000011
5.1 KB
0 CDS

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References

Identification of three novel superantigen-encoding genes in Streptococcus equi subsp. zooepidemicus, szeF, szeN, and szeP
Paillot,R., Darby,A.C., Robinson,C., Wright,N.L., Steward,K.F., Anderson,E., Webb,K., Holden,M.T., Efstratiou,A., Broughton,K., Jolley,K.A., Priestnall,S.L., Marotti Campi,M.C., Hughes,M.A., Radford,A., Erles,K. and Waller,A.S. Infect. Immun. 78 (11), 4817-4827 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Streptococcus equi subsp. zooepidemicus BHS5

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Sequences

References

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