Streptococcus equi subsp. zooepidemicus MGCS10565

The Methodist Hospital Research Institute , Integrated Genomics

Genome Size: 2.0 megabases, GC Content: 41.8%, Released Date: Aug. 11, 2008 #17489

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_011134
1.9 MB
1893 CDS

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References

Genome sequence of a Lancefield group C Streptococcus zooepidemicus strain causing epidemic nephritis: new information about an old disease
Beres,S.B., Sesso,R., Pinto,S.W., Hoe,N.P., Porcella,S.F., Deleo,F.R. and Musser,J.M. PLoS ONE 3 (8), E3026 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Streptococcus equi subsp. zooepidemicus MGCS10565

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Sequences

References

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