Streptococcus gallolyticus subsp. gallolyticus TX20005

Baylor College of Medicine

Genome Size: 2.2 megabases, Released Date: Aug. 24, 2010 #20700

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00011, whole genome shotgun sequence
NZ_AEEM01000001
4.9 KB
0 CDS

Table view
Circular View
Artemis Viewer

contig00012, whole genome shotgun sequence
NZ_AEEM01000002
53.2 KB
63 CDS

Table view
Circular View
Artemis Viewer

contig00013, whole genome shotgun sequence
NZ_AEEM01000003
159.2 KB
157 CDS

Table view
Circular View
Artemis Viewer

contig00014, whole genome shotgun sequence
NZ_AEEM01000004
17.8 KB
20 CDS

Table view
Circular View
Artemis Viewer

contig00015, whole genome shotgun sequence
NZ_AEEM01000005
32.2 KB
30 CDS

Table view
Circular View
Artemis Viewer

contig00016, whole genome shotgun sequence
NZ_AEEM01000006
43.0 KB
44 CDS

Table view
Circular View
Artemis Viewer

contig00017, whole genome shotgun sequence
NZ_AEEM01000007
21.5 KB
25 CDS

Table view
Circular View
Artemis Viewer

contig00018, whole genome shotgun sequence
NZ_AEEM01000008
95.8 KB
112 CDS

Table view
Circular View
Artemis Viewer

contig00019, whole genome shotgun sequence
NZ_AEEM01000009
43.7 KB
47 CDS

Table view
Circular View
Artemis Viewer

contig00020, whole genome shotgun sequence
NZ_AEEM01000010
4.2 KB
7 CDS

Table view
Circular View
Artemis Viewer

contig00021, whole genome shotgun sequence
NZ_AEEM01000011
244.2 KB
259 CDS

Table view
Circular View
Artemis Viewer

contig00022, whole genome shotgun sequence
NZ_AEEM01000012
203.6 KB
196 CDS

Table view
Circular View
Artemis Viewer

contig00023, whole genome shotgun sequence
NZ_AEEM01000013
139.2 KB
132 CDS

Table view
Circular View
Artemis Viewer

contig00024, whole genome shotgun sequence
NZ_AEEM01000014
41.7 KB
42 CDS

Table view
Circular View
Artemis Viewer

contig00025, whole genome shotgun sequence
NZ_AEEM01000015
219.0 KB
231 CDS

Table view
Circular View
Artemis Viewer

contig00026, whole genome shotgun sequence
NZ_AEEM01000016
127.9 KB
127 CDS

Table view
Circular View
Artemis Viewer

contig00027, whole genome shotgun sequence
NZ_AEEM01000017
97.3 KB
98 CDS

Table view
Circular View
Artemis Viewer

contig00028, whole genome shotgun sequence
NZ_AEEM01000018
161.2 KB
172 CDS

Table view
Circular View
Artemis Viewer

contig00029, whole genome shotgun sequence
NZ_AEEM01000019
303.5 KB
313 CDS

Table view
Circular View
Artemis Viewer

contig00030, whole genome shotgun sequence
NZ_AEEM01000020
86.4 KB
84 CDS

Table view
Circular View
Artemis Viewer

contig00031, whole genome shotgun sequence
NZ_AEEM01000021
56.6 KB
54 CDS

Table view
Circular View
Artemis Viewer

contig00032, whole genome shotgun sequence
NZ_AEEM01000022
713 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00034, whole genome shotgun sequence
NZ_AEEM01000023
1.8 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00035, whole genome shotgun sequence
NZ_AEEM01000024
1.4 KB
2 CDS

Table view
Circular View
Artemis Viewer

contig00037, whole genome shotgun sequence
NZ_AEEM01000025
2.1 KB
1 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Streptococcus gallolyticus subsp. gallolyticus TX20005

Search Genome

Sequences

PubMed Search for Streptococcus gallolyticus subsp. gallolyticus TX20005

Related Genomes