Streptococcus gordonii str. Challis substr. CH1

TIGR

Genome Size: 2.2 megabases, GC Content: 40.5%, Released Date: Sept. 11, 2007 #17490

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_009785
2.1 MB
2051 CDS

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References

Genome-Wide Transcriptional Changes in Streptococcus gordonii in Response to Competence Signaling Peptide
Vickerman,M.M., Iobst,S., Jesionowski,A.M. and Gill,S.R. J. Bacteriol. 189 (21), 7799-7807 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Streptococcus gordonii str. Challis substr. CH1

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Sequences

References

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