Streptococcus infantarius subsp. infantarius ATCC BAA-102

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 37.6%, Released Date: Jan. 30, 2008 #18440

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABJK02000001
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABJK02000002
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABJK02000003
4.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABJK02000004
4.5 KB
6 CDS

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whole genome shotgun sequence
NZ_ABJK02000005
7.1 KB
8 CDS

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whole genome shotgun sequence
NZ_ABJK02000006
17.2 KB
18 CDS

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whole genome shotgun sequence
NZ_ABJK02000007
40.1 KB
36 CDS

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whole genome shotgun sequence
NZ_ABJK02000008
30.8 KB
31 CDS

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whole genome shotgun sequence
NZ_ABJK02000009
21.4 KB
27 CDS

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whole genome shotgun sequence
NZ_ABJK02000010
99.7 KB
111 CDS

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whole genome shotgun sequence
NZ_ABJK02000011
19.4 KB
19 CDS

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whole genome shotgun sequence
NZ_ABJK02000012
80.9 KB
82 CDS

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whole genome shotgun sequence
NZ_ABJK02000013
47.0 KB
60 CDS

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whole genome shotgun sequence
NZ_ABJK02000014
39.1 KB
49 CDS

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whole genome shotgun sequence
NZ_ABJK02000015
86.0 KB
98 CDS

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whole genome shotgun sequence
NZ_ABJK02000016
130.4 KB
137 CDS

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whole genome shotgun sequence
NZ_ABJK02000017
138.1 KB
140 CDS

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whole genome shotgun sequence
NZ_ABJK02000018
81.5 KB
93 CDS

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whole genome shotgun sequence
NZ_ABJK02000019
141.5 KB
170 CDS

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whole genome shotgun sequence
NZ_ABJK02000020
246.1 KB
258 CDS

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whole genome shotgun sequence
NZ_ABJK02000021
228.0 KB
246 CDS

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whole genome shotgun sequence
NZ_ABJK02000022
414.6 KB
455 CDS

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Taxonomy

External Links

Streptococcus infantarius subsp. infantarius ATCC BAA-102

Search Genome

Sequences

PubMed Search for Streptococcus infantarius subsp. infantarius ATCC BAA-102

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