Streptococcus mutans NN2025

The Institute of Medical Science, Tokyo University , Graduate School of Frontier Sciences (Dr. Masahira Hattori)

Genome Size: 2.0 megabases, Released Date: July 31, 2009 #20041

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content
  Maruyama,F., Kobata,M., Kurokawa,K., Nishida,K., Sakurai,A., Nakano,K., Nomura,R., Kawabata,S., Ooshima,T., Nakai,K., Hattori,M., Hamada,S. and Nakagawa,I. BMC Genomics 10 (1), 358 (2009)
  PubMed, PubGet, HubMed

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