Streptococcus parasanguinis ATCC 15912

Baylor College of Medicine

Genome Size: 2.1 megabases, Released Date: May 20, 2010 #20709

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00001, whole genome shotgun sequence
NZ_ADVN01000001
836 bytes
0 CDS

Table view
Circular View
Artemis Viewer

contig00002, whole genome shotgun sequence
NZ_ADVN01000002
2.6 KB
2 CDS

Table view
Circular View
Artemis Viewer

contig00005, whole genome shotgun sequence
NZ_ADVN01000003
1012 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00006, whole genome shotgun sequence
NZ_ADVN01000004
5.0 KB
0 CDS

Table view
Circular View
Artemis Viewer

contig00010, whole genome shotgun sequence
NZ_ADVN01000005
501 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00011, whole genome shotgun sequence
NZ_ADVN01000006
2.4 KB
3 CDS

Table view
Circular View
Artemis Viewer

contig00023, whole genome shotgun sequence
NZ_ADVN01000007
535 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00031, whole genome shotgun sequence
NZ_ADVN01000008
41.4 KB
52 CDS

Table view
Circular View
Artemis Viewer

contig00032, whole genome shotgun sequence
NZ_ADVN01000009
71.2 KB
72 CDS

Table view
Circular View
Artemis Viewer

contig00033, whole genome shotgun sequence
NZ_ADVN01000010
69.0 KB
69 CDS

Table view
Circular View
Artemis Viewer

contig00034, whole genome shotgun sequence
NZ_ADVN01000011
64.9 KB
56 CDS

Table view
Circular View
Artemis Viewer

contig00035, whole genome shotgun sequence
NZ_ADVN01000012
6.7 KB
9 CDS

Table view
Circular View
Artemis Viewer

contig00036, whole genome shotgun sequence
NZ_ADVN01000013
47.6 KB
35 CDS

Table view
Circular View
Artemis Viewer

contig00037, whole genome shotgun sequence
NZ_ADVN01000014
4.2 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00038, whole genome shotgun sequence
NZ_ADVN01000015
202 bytes
1 CDS

Table view
Circular View
Artemis Viewer

contig00039, whole genome shotgun sequence
NZ_ADVN01000016
13.8 KB
7 CDS

Table view
Circular View
Artemis Viewer

contig00040, whole genome shotgun sequence
NZ_ADVN01000017
67.8 KB
53 CDS

Table view
Circular View
Artemis Viewer

contig00041, whole genome shotgun sequence
NZ_ADVN01000018
12.4 KB
19 CDS

Table view
Circular View
Artemis Viewer

contig00042, whole genome shotgun sequence
NZ_ADVN01000019
11.1 KB
10 CDS

Table view
Circular View
Artemis Viewer

contig00043, whole genome shotgun sequence
NZ_ADVN01000020
91.9 KB
82 CDS

Table view
Circular View
Artemis Viewer

contig00044, whole genome shotgun sequence
NZ_ADVN01000021
56.0 KB
46 CDS

Table view
Circular View
Artemis Viewer

contig00045, whole genome shotgun sequence
NZ_ADVN01000022
28.5 KB
31 CDS

Table view
Circular View
Artemis Viewer

contig00046, whole genome shotgun sequence
NZ_ADVN01000023
50.1 KB
54 CDS

Table view
Circular View
Artemis Viewer

contig00047, whole genome shotgun sequence
NZ_ADVN01000024
21.1 KB
28 CDS

Table view
Circular View
Artemis Viewer

contig00048, whole genome shotgun sequence
NZ_ADVN01000025
4.8 KB
4 CDS

Table view
Circular View
Artemis Viewer

contig00049, whole genome shotgun sequence
NZ_ADVN01000026
42.3 KB
40 CDS

Table view
Circular View
Artemis Viewer

contig00050, whole genome shotgun sequence
NZ_ADVN01000027
4.3 KB
3 CDS

Table view
Circular View
Artemis Viewer

contig00051, whole genome shotgun sequence
NZ_ADVN01000028
154.5 KB
150 CDS

Table view
Circular View
Artemis Viewer

contig00052, whole genome shotgun sequence
NZ_ADVN01000029
56.3 KB
54 CDS

Table view
Circular View
Artemis Viewer

contig00053, whole genome shotgun sequence
NZ_ADVN01000030
156.6 KB
159 CDS

Table view
Circular View
Artemis Viewer

contig00054, whole genome shotgun sequence
NZ_ADVN01000031
142.7 KB
136 CDS

Table view
Circular View
Artemis Viewer

contig00055, whole genome shotgun sequence
NZ_ADVN01000032
38.0 KB
36 CDS

Table view
Circular View
Artemis Viewer

contig00056, whole genome shotgun sequence
NZ_ADVN01000033
21.3 KB
22 CDS

Table view
Circular View
Artemis Viewer

contig00057, whole genome shotgun sequence
NZ_ADVN01000034
234.7 KB
233 CDS

Table view
Circular View
Artemis Viewer

contig00058, whole genome shotgun sequence
NZ_ADVN01000035
21.3 KB
23 CDS

Table view
Circular View
Artemis Viewer

contig00059, whole genome shotgun sequence
NZ_ADVN01000036
28.8 KB
27 CDS

Table view
Circular View
Artemis Viewer

contig00060, whole genome shotgun sequence
NZ_ADVN01000037
33.1 KB
32 CDS

Table view
Circular View
Artemis Viewer

contig00061, whole genome shotgun sequence
NZ_ADVN01000038
51.4 KB
62 CDS

Table view
Circular View
Artemis Viewer

contig00062, whole genome shotgun sequence
NZ_ADVN01000039
4.4 KB
5 CDS

Table view
Circular View
Artemis Viewer

contig00063, whole genome shotgun sequence
NZ_ADVN01000040
17.1 KB
15 CDS

Table view
Circular View
Artemis Viewer

contig00064, whole genome shotgun sequence
NZ_ADVN01000041
67.4 KB
66 CDS

Table view
Circular View
Artemis Viewer

contig00065, whole genome shotgun sequence
NZ_ADVN01000042
269.3 KB
273 CDS

Table view
Circular View
Artemis Viewer

contig00066, whole genome shotgun sequence
NZ_ADVN01000043
4.7 KB
6 CDS

Table view
Circular View
Artemis Viewer

contig00067, whole genome shotgun sequence
NZ_ADVN01000044
15.0 KB
18 CDS

Table view
Circular View
Artemis Viewer

contig00068, whole genome shotgun sequence
NZ_ADVN01000045
32.1 KB
32 CDS

Table view
Circular View
Artemis Viewer

contig00083, whole genome shotgun sequence
NZ_ADVN01000046
1.1 KB
1 CDS

Table view
Circular View
Artemis Viewer

contig00101, whole genome shotgun sequence
NZ_ADVN01000047
3.2 KB
5 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Streptococcus parasanguinis ATCC 15912

Search Genome

Sequences

PubMed Search for Streptococcus parasanguinis ATCC 15912

Related Genomes