Streptococcus parasanguinis F0405

J. Craig Venter Institute

Genome Size: 2.1 megabases, Released Date: Nov. 4, 2010 #20710

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

ctg1126926831361, whole genome shotgun sequence
NZ_AEKM01000001
89.0 KB
176 CDS

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ctg1126926831357, whole genome shotgun sequence
NZ_AEKM01000002
114.7 KB
256 CDS

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ctg1126926831352, whole genome shotgun sequence
NZ_AEKM01000003
196.8 KB
336 CDS

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ctg1126926831351, whole genome shotgun sequence
NZ_AEKM01000004
1.4 KB
2 CDS

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ctg1126926831366, whole genome shotgun sequence
NZ_AEKM01000005
123.1 KB
254 CDS

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ctg1126926831363, whole genome shotgun sequence
NZ_AEKM01000006
223.6 KB
448 CDS

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ctg1126926831356, whole genome shotgun sequence
NZ_AEKM01000007
195.9 KB
404 CDS

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ctg1126926831353, whole genome shotgun sequence
NZ_AEKM01000008
106.2 KB
182 CDS

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ctg1126926831359, whole genome shotgun sequence
NZ_AEKM01000009
14.9 KB
32 CDS

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ctg1126926831362, whole genome shotgun sequence
NZ_AEKM01000010
197.4 KB
432 CDS

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ctg1126926831364, whole genome shotgun sequence
NZ_AEKM01000011
93.1 KB
180 CDS

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ctg1126926831365, whole genome shotgun sequence
NZ_AEKM01000012
272.9 KB
518 CDS

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ctg1126926831358, whole genome shotgun sequence
NZ_AEKM01000013
18.6 KB
30 CDS

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ctg1126926831354, whole genome shotgun sequence
NZ_AEKM01000014
5.8 KB
12 CDS

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ctg1126926831360, whole genome shotgun sequence
NZ_AEKM01000015
1.8 KB
6 CDS

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ctg1126926831355, whole genome shotgun sequence
NZ_AEKM01000016
347.2 KB
688 CDS

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Taxonomy

External Links

Streptococcus parasanguinis F0405

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Sequences

PubMed Search for Streptococcus parasanguinis F0405

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