Streptococcus pneumoniae AP200

Istituto di Teconologie Biomediche, Consiglio Nazionale delle Ricerche , Istituto Superiore di Sanità , Istituto di Teconologie Biomediche, Consiglio Nazionale delle Ricerche, Italia , Università di Siena

Genome Size: 2.1 megabases, Released Date: Sept. 7, 2010 #20043

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• New genetic element carrying the erythromycin resistance determinant erm(TR) in Streptococcus pneumoniae
  Camilli,R., Del Grosso,M., Iannelli,F. and Pantosti,A. Antimicrob. Agents Chemother. 52 (2), 619-625 (2008)
  PubMed, PubGet, HubMed

Related Genomes

• Streptococcus pneumoniae 70585
• Streptococcus pneumoniae ATCC 700669
• Streptococcus pneumoniae CGSP14
• Streptococcus pneumoniae D39
• Streptococcus pneumoniae G54
• Streptococcus pneumoniae Hungary19A-6
• Streptococcus pneumoniae JJA
• Streptococcus pneumoniae P1031
• Streptococcus pneumoniae R6
• Streptococcus pneumoniae TIGR4
• Streptococcus pneumoniae Taiwan19F-14
• Streptococcus pneumoniae CCRI 1974
• Streptococcus pneumoniae CCRI 1974M2
• Streptococcus pneumoniae CDC0288-04
• Streptococcus pneumoniae CDC1087-00
• Streptococcus pneumoniae CDC1873-00
• Streptococcus pneumoniae CDC3059-06
• Streptococcus pneumoniae MLV-016
• Streptococcus pneumoniae SP11-BS70
• Streptococcus pneumoniae SP14-BS69
• Streptococcus pneumoniae SP18-BS74
• Streptococcus pneumoniae SP19-BS75
• Streptococcus pneumoniae SP195
• Streptococcus pneumoniae SP23-BS72
• Streptococcus pneumoniae SP3-BS71
• Streptococcus pneumoniae SP6-BS73
• Streptococcus pneumoniae SP9-BS68
• Streptococcus pneumoniae TIGR4
• Streptococcus pneumoniae 670-6B
• Streptococcus pneumoniae INV104
• Streptococcus pneumoniae INV200
• Streptococcus pneumoniae OXC141
• Streptococcus pneumoniae SPN032672
• Streptococcus pneumoniae SPN033038
• Streptococcus pneumoniae SPN034156
• Streptococcus pneumoniae SPN034183
• Streptococcus pneumoniae SPN994038
• Streptococcus pneumoniae SPN994039
• Streptococcus pneumoniae TCH8431/19A
• Streptococcus pneumoniae 06-01-003MEF
• Streptococcus pneumoniae BS397
• Streptococcus pneumoniae BS455
• Streptococcus pneumoniae BS457
• Streptococcus pneumoniae BS458
• Streptococcus pneumoniae SP-BS293
• Streptococcus pneumoniae SP14-BS292
• Streptococcus pneumoniae SPN021198
• Streptococcus pneumoniae SPN061370
• Streptococcus pneumoniae SPN072838
• Streptococcus pneumoniae SPN1041
• Streptococcus pneumoniae SPN7465
• Streptococcus pneumoniae SPNA45
• Streptococcus pneumoniae str. Canada MDR_19A
• Streptococcus pneumoniae str. Canada MDR_19F