Streptococcus pneumoniae CCRI 1974

McGill University, Canada

GC Content: 39.6%, Released Date: Nov. 14, 2008 #18441

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABZC01000001
12.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZC01000002
26.6 KB
29 CDS

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whole genome shotgun sequence
NZ_ABZC01000003
23.1 KB
23 CDS

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whole genome shotgun sequence
NZ_ABZC01000004
19.7 KB
27 CDS

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whole genome shotgun sequence
NZ_ABZC01000005
4.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ABZC01000006
8.3 KB
12 CDS

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whole genome shotgun sequence
NZ_ABZC01000007
23.8 KB
28 CDS

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whole genome shotgun sequence
NZ_ABZC01000008
11.7 KB
12 CDS

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whole genome shotgun sequence
NZ_ABZC01000009
8.7 KB
7 CDS

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whole genome shotgun sequence
NZ_ABZC01000010
12.1 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZC01000011
11.0 KB
14 CDS

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whole genome shotgun sequence
NZ_ABZC01000012
716 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABZC01000013
7.7 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZC01000014
9.4 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZC01000015
8.2 KB
11 CDS

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whole genome shotgun sequence
NZ_ABZC01000016
13.2 KB
14 CDS

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whole genome shotgun sequence
NZ_ABZC01000017
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZC01000018
17.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ABZC01000019
7.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZC01000020
46.8 KB
45 CDS

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whole genome shotgun sequence
NZ_ABZC01000021
5.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZC01000022
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZC01000023
14.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ABZC01000024
21.2 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZC01000025
6.5 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZC01000026
32.7 KB
29 CDS

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whole genome shotgun sequence
NZ_ABZC01000027
11.6 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZC01000028
13.7 KB
17 CDS

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whole genome shotgun sequence
NZ_ABZC01000029
16.7 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZC01000030
2.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZC01000031
661 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZC01000032
18.1 KB
16 CDS

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whole genome shotgun sequence
NZ_ABZC01000033
2.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZC01000034
19.1 KB
22 CDS

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whole genome shotgun sequence
NZ_ABZC01000035
17.7 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZC01000036
7.0 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZC01000037
42.7 KB
44 CDS

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whole genome shotgun sequence
NZ_ABZC01000038
136.2 KB
153 CDS

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whole genome shotgun sequence
NZ_ABZC01000039
38.7 KB
46 CDS

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whole genome shotgun sequence
NZ_ABZC01000040
22.6 KB
21 CDS

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whole genome shotgun sequence
NZ_ABZC01000041
46.7 KB
49 CDS

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whole genome shotgun sequence
NZ_ABZC01000042
75.0 KB
79 CDS

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whole genome shotgun sequence
NZ_ABZC01000043
637 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZC01000044
6.2 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZC01000045
8.6 KB
11 CDS

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whole genome shotgun sequence
NZ_ABZC01000046
27.3 KB
28 CDS

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whole genome shotgun sequence
NZ_ABZC01000047
9.5 KB
11 CDS

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whole genome shotgun sequence
NZ_ABZC01000048
10.2 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZC01000049
20.6 KB
25 CDS

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whole genome shotgun sequence
NZ_ABZC01000050
24.0 KB
24 CDS

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whole genome shotgun sequence
NZ_ABZC01000051
6.4 KB
7 CDS

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whole genome shotgun sequence
NZ_ABZC01000052
56.1 KB
63 CDS

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whole genome shotgun sequence
NZ_ABZC01000053
15.8 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZC01000054
69.0 KB
67 CDS

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whole genome shotgun sequence
NZ_ABZC01000055
4.4 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZC01000056
6.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZC01000057
1.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZC01000058
6.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZC01000059
23.7 KB
26 CDS

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whole genome shotgun sequence
NZ_ABZC01000060
24.6 KB
17 CDS

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whole genome shotgun sequence
NZ_ABZC01000061
600 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZC01000062
48.9 KB
53 CDS

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whole genome shotgun sequence
NZ_ABZC01000063
12.3 KB
13 CDS

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whole genome shotgun sequence
NZ_ABZC01000064
17.9 KB
22 CDS

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whole genome shotgun sequence
NZ_ABZC01000065
2.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZC01000066
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZC01000067
3.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZC01000068
5.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZC01000069
12.8 KB
12 CDS

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whole genome shotgun sequence
NZ_ABZC01000070
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZC01000071
2.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZC01000072
12.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZC01000073
15.5 KB
16 CDS

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whole genome shotgun sequence
NZ_ABZC01000074
10.6 KB
11 CDS

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whole genome shotgun sequence
NZ_ABZC01000075
21.8 KB
26 CDS

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whole genome shotgun sequence
NZ_ABZC01000076
13.6 KB
16 CDS

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whole genome shotgun sequence
NZ_ABZC01000077
2.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZC01000078
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZC01000079
24.9 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZC01000080
13.9 KB
14 CDS

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whole genome shotgun sequence
NZ_ABZC01000081
21.2 KB
22 CDS

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whole genome shotgun sequence
NZ_ABZC01000082
47.6 KB
53 CDS

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whole genome shotgun sequence
NZ_ABZC01000083
33.9 KB
25 CDS

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whole genome shotgun sequence
NZ_ABZC01000084
22.0 KB
22 CDS

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whole genome shotgun sequence
NZ_ABZC01000085
18.0 KB
22 CDS

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whole genome shotgun sequence
NZ_ABZC01000086
9.2 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZC01000087
577 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZC01000088
9.1 KB
8 CDS

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whole genome shotgun sequence
NZ_ABZC01000089
816 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZC01000090
11.6 KB
8 CDS

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whole genome shotgun sequence
NZ_ABZC01000091
12.2 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZC01000092
5.1 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZC01000093
38.3 KB
37 CDS

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whole genome shotgun sequence
NZ_ABZC01000094
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZC01000095
7.5 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZC01000096
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZC01000097
813 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABZC01000098
23.3 KB
28 CDS

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whole genome shotgun sequence
NZ_ABZC01000099
7.7 KB
7 CDS

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whole genome shotgun sequence
NZ_ABZC01000100
5.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZC01000101
4.1 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZC01000102
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZC01000103
30.6 KB
34 CDS

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whole genome shotgun sequence
NZ_ABZC01000104
15.3 KB
18 CDS

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whole genome shotgun sequence
NZ_ABZC01000105
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZC01000106
665 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZC01000107
3.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZC01000108
10.2 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZC01000109
6.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZC01000110
59.6 KB
68 CDS

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whole genome shotgun sequence
NZ_ABZC01000111
14.2 KB
18 CDS

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whole genome shotgun sequence
NZ_ABZC01000112
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZC01000113
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZC01000114
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZC01000115
57.0 KB
68 CDS

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whole genome shotgun sequence
NZ_ABZC01000116
10.0 KB
14 CDS

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whole genome shotgun sequence
NZ_ABZC01000117
19.5 KB
23 CDS

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whole genome shotgun sequence
NZ_ABZC01000118
7.9 KB
11 CDS

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whole genome shotgun sequence
NZ_ABZC01000119
10.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZC01000120
40.9 KB
39 CDS

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whole genome shotgun sequence
NZ_ABZC01000121
1.5 KB
3 CDS

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References

Genome sequencing of linezolid-resistant Streptococcus pneumoniae mutants reveals novel mechanisms of resistance
Feng,J., Lupien,A., Gingras,H., Wasserscheid,J., Dewar,K., Legare,D. and Ouellette,M. Genome Res. 19 (7), 1214-1223 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Streptococcus pneumoniae CCRI 1974

Search Genome

Sequences

References

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