Streptococcus pneumoniae CCRI 1974M2

McGill University, Canada

GC Content: 39.6%, Released Date: Nov. 19, 2008 #18442

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABZT01000001
26.7 KB
29 CDS

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whole genome shotgun sequence
NZ_ABZT01000002
31.0 KB
36 CDS

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whole genome shotgun sequence
NZ_ABZT01000003
7.6 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZT01000004
7.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZT01000005
14.4 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZT01000006
13.6 KB
17 CDS

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whole genome shotgun sequence
NZ_ABZT01000007
26.4 KB
24 CDS

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whole genome shotgun sequence
NZ_ABZT01000008
69.0 KB
68 CDS

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whole genome shotgun sequence
NZ_ABZT01000009
23.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ABZT01000010
8.2 KB
11 CDS

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whole genome shotgun sequence
NZ_ABZT01000011
2.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZT01000012
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZT01000013
33.6 KB
31 CDS

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whole genome shotgun sequence
NZ_ABZT01000014
4.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZT01000015
21.0 KB
21 CDS

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whole genome shotgun sequence
NZ_ABZT01000016
813 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABZT01000017
22.8 KB
25 CDS

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whole genome shotgun sequence
NZ_ABZT01000018
47.6 KB
53 CDS

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whole genome shotgun sequence
NZ_ABZT01000019
30.7 KB
35 CDS

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whole genome shotgun sequence
NZ_ABZT01000020
636 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZT01000021
6.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ABZT01000022
627 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZT01000023
56.8 KB
66 CDS

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whole genome shotgun sequence
NZ_ABZT01000024
5.7 KB
7 CDS

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whole genome shotgun sequence
NZ_ABZT01000025
9.6 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZT01000026
11.4 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZT01000027
40.8 KB
34 CDS

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whole genome shotgun sequence
NZ_ABZT01000028
22.6 KB
23 CDS

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whole genome shotgun sequence
NZ_ABZT01000029
23.4 KB
22 CDS

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whole genome shotgun sequence
NZ_ABZT01000030
10.6 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZT01000031
16.0 KB
17 CDS

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whole genome shotgun sequence
NZ_ABZT01000032
5.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZT01000033
3.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZT01000034
7.0 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZT01000035
136.2 KB
152 CDS

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whole genome shotgun sequence
NZ_ABZT01000036
7.7 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZT01000037
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZT01000038
5.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZT01000039
17.9 KB
19 CDS

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whole genome shotgun sequence
NZ_ABZT01000040
3.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZT01000041
15.1 KB
18 CDS

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whole genome shotgun sequence
NZ_ABZT01000042
23.4 KB
27 CDS

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whole genome shotgun sequence
NZ_ABZT01000043
23.6 KB
25 CDS

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whole genome shotgun sequence
NZ_ABZT01000044
11.8 KB
8 CDS

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whole genome shotgun sequence
NZ_ABZT01000045
2.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZT01000046
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZT01000047
33.5 KB
34 CDS

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whole genome shotgun sequence
NZ_ABZT01000048
31.8 KB
27 CDS

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whole genome shotgun sequence
NZ_ABZT01000049
24.6 KB
17 CDS

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whole genome shotgun sequence
NZ_ABZT01000050
21.2 KB
22 CDS

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whole genome shotgun sequence
NZ_ABZT01000051
5.1 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZT01000052
14.8 KB
15 CDS

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whole genome shotgun sequence
NZ_ABZT01000053
7.1 KB
11 CDS

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whole genome shotgun sequence
NZ_ABZT01000054
23.5 KB
33 CDS

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whole genome shotgun sequence
NZ_ABZT01000055
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZT01000056
10.6 KB
11 CDS

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whole genome shotgun sequence
NZ_ABZT01000057
5.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZT01000058
19.8 KB
27 CDS

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whole genome shotgun sequence
NZ_ABZT01000059
14.5 KB
15 CDS

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whole genome shotgun sequence
NZ_ABZT01000060
6.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZT01000061
11.7 KB
12 CDS

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whole genome shotgun sequence
NZ_ABZT01000062
714 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABZT01000063
662 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZT01000064
5.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABZT01000065
6.3 KB
8 CDS

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whole genome shotgun sequence
NZ_ABZT01000066
19.1 KB
21 CDS

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whole genome shotgun sequence
NZ_ABZT01000067
4.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ABZT01000068
30.4 KB
33 CDS

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whole genome shotgun sequence
NZ_ABZT01000069
505 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZT01000070
8.9 KB
8 CDS

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whole genome shotgun sequence
NZ_ABZT01000071
22.4 KB
23 CDS

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whole genome shotgun sequence
NZ_ABZT01000072
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZT01000073
23.5 KB
25 CDS

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whole genome shotgun sequence
NZ_ABZT01000074
23.7 KB
27 CDS

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whole genome shotgun sequence
NZ_ABZT01000075
48.9 KB
52 CDS

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whole genome shotgun sequence
NZ_ABZT01000076
8.3 KB
12 CDS

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whole genome shotgun sequence
NZ_ABZT01000077
32.2 KB
34 CDS

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whole genome shotgun sequence
NZ_ABZT01000078
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZT01000079
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZT01000080
6.4 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZT01000081
4.6 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZT01000082
30.9 KB
34 CDS

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whole genome shotgun sequence
NZ_ABZT01000083
2.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZT01000084
20.5 KB
18 CDS

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whole genome shotgun sequence
NZ_ABZT01000085
33.8 KB
26 CDS

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whole genome shotgun sequence
NZ_ABZT01000086
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZT01000087
606 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZT01000088
6.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZT01000089
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZT01000090
9.6 KB
11 CDS

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whole genome shotgun sequence
NZ_ABZT01000091
12.3 KB
14 CDS

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whole genome shotgun sequence
NZ_ABZT01000092
23.1 KB
23 CDS

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whole genome shotgun sequence
NZ_ABZT01000093
3.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ABZT01000094
12.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZT01000095
527 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZT01000096
14.8 KB
17 CDS

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whole genome shotgun sequence
NZ_ABZT01000097
24.0 KB
25 CDS

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whole genome shotgun sequence
NZ_ABZT01000098
18.4 KB
25 CDS

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whole genome shotgun sequence
NZ_ABZT01000099
38.3 KB
38 CDS

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whole genome shotgun sequence
NZ_ABZT01000100
16.8 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZT01000101
6.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ABZT01000102
30.8 KB
28 CDS

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whole genome shotgun sequence
NZ_ABZT01000103
6.2 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZT01000104
18.1 KB
15 CDS

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whole genome shotgun sequence
NZ_ABZT01000105
617 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZT01000106
18.5 KB
21 CDS

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whole genome shotgun sequence
NZ_ABZT01000107
57.6 KB
61 CDS

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whole genome shotgun sequence
NZ_ABZT01000108
22.5 KB
26 CDS

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whole genome shotgun sequence
NZ_ABZT01000109
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZT01000110
10.9 KB
5 CDS

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whole genome shotgun sequence
NZ_ABZT01000111
10.1 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZT01000112
18.1 KB
24 CDS

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whole genome shotgun sequence
NZ_ABZT01000113
13.0 KB
11 CDS

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whole genome shotgun sequence
NZ_ABZT01000114
575 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABZT01000115
11.8 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZT01000116
5.3 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZT01000117
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABZT01000118
14.0 KB
13 CDS

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whole genome shotgun sequence
NZ_ABZT01000119
10.4 KB
10 CDS

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whole genome shotgun sequence
NZ_ABZT01000120
2.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ABZT01000121
558 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABZT01000122
5.4 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZT01000123
7.6 KB
8 CDS

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whole genome shotgun sequence
NZ_ABZT01000124
16.7 KB
20 CDS

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whole genome shotgun sequence
NZ_ABZT01000125
4.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ABZT01000126
18.0 KB
21 CDS

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whole genome shotgun sequence
NZ_ABZT01000127
2.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZT01000128
5.7 KB
9 CDS

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whole genome shotgun sequence
NZ_ABZT01000129
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABZT01000130
12.1 KB
10 CDS

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References

Genome sequencing of linezolid-resistant Streptococcus pneumoniae mutants reveals novel mechanisms of resistance
Feng,J., Lupien,A., Gingras,H., Wasserscheid,J., Dewar,K., Legare,D. and Ouellette,M. Genome Res. 19 (7), 1214-1223 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Streptococcus pneumoniae CCRI 1974M2

Search Genome

Sequences

References

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