Streptococcus pneumoniae CDC0288-04

J. Craig Venter Institute

GC Content: 39.9%, Released Date: Oct. 9, 2007 #18443

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABGF01000001
293.4 KB
267 CDS

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whole genome shotgun sequence
NZ_ABGF01000002
259.4 KB
249 CDS

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whole genome shotgun sequence
NZ_ABGF01000003
235.1 KB
224 CDS

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whole genome shotgun sequence
NZ_ABGF01000004
212.9 KB
206 CDS

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whole genome shotgun sequence
NZ_ABGF01000005
203.8 KB
172 CDS

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whole genome shotgun sequence
NZ_ABGF01000006
111.7 KB
100 CDS

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whole genome shotgun sequence
NZ_ABGF01000007
103.0 KB
97 CDS

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whole genome shotgun sequence
NZ_ABGF01000008
102.0 KB
93 CDS

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whole genome shotgun sequence
NZ_ABGF01000009
82.4 KB
88 CDS

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whole genome shotgun sequence
NZ_ABGF01000010
81.7 KB
61 CDS

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whole genome shotgun sequence
NZ_ABGF01000011
64.9 KB
55 CDS

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whole genome shotgun sequence
NZ_ABGF01000012
58.3 KB
52 CDS

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whole genome shotgun sequence
NZ_ABGF01000013
53.1 KB
49 CDS

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whole genome shotgun sequence
NZ_ABGF01000014
50.6 KB
32 CDS

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whole genome shotgun sequence
NZ_ABGF01000015
44.1 KB
48 CDS

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whole genome shotgun sequence
NZ_ABGF01000016
9.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ABGF01000017
7.3 KB
7 CDS

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whole genome shotgun sequence
NZ_ABGF01000018
4.6 KB
6 CDS

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whole genome shotgun sequence
NZ_ABGF01000019
3.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGF01000020
3.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABGF01000021
2.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGF01000022
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ABGF01000023
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGF01000024
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ABGF01000025
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGF01000026
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGF01000027
1012 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGF01000028
1007 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGF01000029
998 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGF01000030
938 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGF01000031
931 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGF01000032
656 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGF01000033
578 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABGF01000034
521 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGF01000035
475 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABGF01000036
463 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABGF01000037
398 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABGF01000038
222 bytes
0 CDS

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Taxonomy

External Links

Streptococcus pneumoniae CDC0288-04

Search Genome

Sequences

PubMed Search for Streptococcus pneumoniae CDC0288-04

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