Streptococcus pneumoniae CDC1873-00

J. Craig Venter Institute

GC Content: 39.6%, Released Date: Sept. 20, 2007 #18445

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABFS01000001
358.3 KB
315 CDS

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whole genome shotgun sequence
NZ_ABFS01000002
282.7 KB
234 CDS

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whole genome shotgun sequence
NZ_ABFS01000003
160.0 KB
151 CDS

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whole genome shotgun sequence
NZ_ABFS01000004
135.4 KB
128 CDS

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whole genome shotgun sequence
NZ_ABFS01000005
126.4 KB
135 CDS

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whole genome shotgun sequence
NZ_ABFS01000006
98.1 KB
105 CDS

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whole genome shotgun sequence
NZ_ABFS01000007
84.7 KB
91 CDS

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whole genome shotgun sequence
NZ_ABFS01000008
82.4 KB
71 CDS

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whole genome shotgun sequence
NZ_ABFS01000009
78.8 KB
63 CDS

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whole genome shotgun sequence
NZ_ABFS01000010
71.5 KB
65 CDS

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whole genome shotgun sequence
NZ_ABFS01000011
66.0 KB
63 CDS

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whole genome shotgun sequence
NZ_ABFS01000012
64.8 KB
61 CDS

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whole genome shotgun sequence
NZ_ABFS01000013
59.6 KB
55 CDS

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whole genome shotgun sequence
NZ_ABFS01000014
49.4 KB
48 CDS

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whole genome shotgun sequence
NZ_ABFS01000015
45.7 KB
45 CDS

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whole genome shotgun sequence
NZ_ABFS01000016
39.6 KB
33 CDS

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whole genome shotgun sequence
NZ_ABFS01000017
39.1 KB
36 CDS

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whole genome shotgun sequence
NZ_ABFS01000018
37.5 KB
26 CDS

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whole genome shotgun sequence
NZ_ABFS01000019
35.7 KB
38 CDS

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whole genome shotgun sequence
NZ_ABFS01000020
34.3 KB
33 CDS

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whole genome shotgun sequence
NZ_ABFS01000021
32.6 KB
29 CDS

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whole genome shotgun sequence
NZ_ABFS01000022
30.5 KB
41 CDS

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whole genome shotgun sequence
NZ_ABFS01000023
26.7 KB
24 CDS

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whole genome shotgun sequence
NZ_ABFS01000024
25.1 KB
23 CDS

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whole genome shotgun sequence
NZ_ABFS01000025
21.9 KB
21 CDS

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whole genome shotgun sequence
NZ_ABFS01000026
20.7 KB
18 CDS

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whole genome shotgun sequence
NZ_ABFS01000027
16.4 KB
10 CDS

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whole genome shotgun sequence
NZ_ABFS01000028
15.7 KB
14 CDS

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whole genome shotgun sequence
NZ_ABFS01000029
9.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ABFS01000030
8.9 KB
15 CDS

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whole genome shotgun sequence
NZ_ABFS01000031
7.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABFS01000032
6.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ABFS01000033
5.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFS01000034
5.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFS01000035
3.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ABFS01000036
3.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABFS01000037
3.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFS01000038
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFS01000039
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFS01000040
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFS01000041
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABFS01000042
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFS01000043
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFS01000044
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFS01000045
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABFS01000046
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFS01000047
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFS01000048
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFS01000049
995 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFS01000050
987 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFS01000051
904 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFS01000052
726 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFS01000053
591 bytes
0 CDS

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Taxonomy

External Links

Streptococcus pneumoniae CDC1873-00

Search Genome

Sequences

PubMed Search for Streptococcus pneumoniae CDC1873-00

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