Streptococcus pneumoniae CDC3059-06

J. Craig Venter Institute

GC Content: 39.9%, Released Date: Oct. 9, 2007 #18446

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABGG01000001
382.7 KB
335 CDS

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whole genome shotgun sequence
NZ_ABGG01000002
350.0 KB
314 CDS

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whole genome shotgun sequence
NZ_ABGG01000003
275.2 KB
244 CDS

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whole genome shotgun sequence
NZ_ABGG01000004
239.5 KB
238 CDS

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whole genome shotgun sequence
NZ_ABGG01000005
205.9 KB
177 CDS

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whole genome shotgun sequence
NZ_ABGG01000006
123.4 KB
117 CDS

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whole genome shotgun sequence
NZ_ABGG01000007
102.2 KB
97 CDS

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whole genome shotgun sequence
NZ_ABGG01000008
90.9 KB
81 CDS

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whole genome shotgun sequence
NZ_ABGG01000009
77.8 KB
66 CDS

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whole genome shotgun sequence
NZ_ABGG01000010
65.5 KB
57 CDS

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whole genome shotgun sequence
NZ_ABGG01000011
40.2 KB
34 CDS

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whole genome shotgun sequence
NZ_ABGG01000012
39.0 KB
38 CDS

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whole genome shotgun sequence
NZ_ABGG01000013
38.2 KB
34 CDS

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whole genome shotgun sequence
NZ_ABGG01000014
37.7 KB
54 CDS

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whole genome shotgun sequence
NZ_ABGG01000015
37.2 KB
55 CDS

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whole genome shotgun sequence
NZ_ABGG01000016
32.7 KB
46 CDS

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whole genome shotgun sequence
NZ_ABGG01000017
30.2 KB
46 CDS

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whole genome shotgun sequence
NZ_ABGG01000018
24.8 KB
27 CDS

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whole genome shotgun sequence
NZ_ABGG01000019
16.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ABGG01000020
6.9 KB
10 CDS

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whole genome shotgun sequence
NZ_ABGG01000021
4.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGG01000022
4.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABGG01000023
2.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABGG01000024
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ABGG01000025
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGG01000026
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABGG01000027
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGG01000028
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABGG01000029
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABGG01000030
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGG01000031
938 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGG01000032
884 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGG01000033
638 bytes
0 CDS

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Taxonomy

External Links

Streptococcus pneumoniae CDC3059-06

Search Genome

Sequences

PubMed Search for Streptococcus pneumoniae CDC3059-06

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