Streptococcus pneumoniae D39

TIGR

Genome Size: 2.0 megabases, GC Content: 39.7%, Released Date: Oct. 12, 2006 #17495

 Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6
  Lanie,J.A., Ng,W.L., Kazmierczak,K.M., Andrzejewski,T.M., Davidsen,T.M., Wayne,K.J., Tettelin,H., Glass,J.I. and Winkler,M.E. J. Bacteriol. 189 (1), 38-51 (2007)
  PubMed, PubGet, HubMed

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