Streptococcus pneumoniae R6

Eli Lilly and Company

Genome Size: 2.0 megabases, GC Content: 39.7%, Released Date: Sept. 7, 2001 #17500

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Genome of the bacterium Streptococcus pneumoniae strain R6
  Hoskins,J.A., Alborn,W. Jr., Arnold,J., Blaszczak,L., Burgett,S., DeHoff,B.S., Estrem,S., Fritz,L., Fu,D.-J., Fuller,W., Geringer,C., Gilmour,R., Glass,J.S., Khoja,H., Kraft,A., LaGace,R., LeBlanc,D.J., Lee,L.N., Lefkowitz,E.J., Lu,J., Matsushima,P., McAhren,S., McHenney,M., McLeaster,K., Mundy,C., Nicas,T.I., Norris,F.H., O'Gara,M., Peery,R., Robertson,G.T., Rockey,P., Sun,P.-M., Winkler,M.E., Yang,Y., Young-Bellido,M., Zhao,G., Zook,C., Baltz,R.H., Jaskunas,S.Richard., Rosteck,P.R. Jr., Skatrud,P.L. and Glass,J.I. J. Bacteriol. 183 (19), 5709-5717 (2001)
  PubMed, PubGet, HubMed

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