Streptococcus pneumoniae SP-BS293

Allegheny-Singer Research Institute (ASRI)

Genome Size: 2.1 megabases, Released Date: Aug. 12, 2010 #20716

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

ctg150, whole genome shotgun sequence
NZ_ABWU01000001
269.2 KB
306 CDS

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ctg174, whole genome shotgun sequence
NZ_ABWU01000002
227.2 KB
250 CDS

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ctg90, whole genome shotgun sequence
NZ_ABWU01000003
211.1 KB
273 CDS

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ctg168, whole genome shotgun sequence
NZ_ABWU01000004
203.0 KB
209 CDS

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ctg170, whole genome shotgun sequence
NZ_ABWU01000005
174.9 KB
171 CDS

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ctg173, whole genome shotgun sequence
NZ_ABWU01000006
145.8 KB
174 CDS

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ctg128, whole genome shotgun sequence
NZ_ABWU01000007
101.7 KB
110 CDS

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ctg36, whole genome shotgun sequence
NZ_ABWU01000008
94.4 KB
112 CDS

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ctg145, whole genome shotgun sequence
NZ_ABWU01000009
73.1 KB
84 CDS

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ctg96, whole genome shotgun sequence
NZ_ABWU01000010
72.7 KB
87 CDS

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ctg28, whole genome shotgun sequence
NZ_ABWU01000011
65.9 KB
69 CDS

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ctg175, whole genome shotgun sequence
NZ_ABWU01000012
55.6 KB
60 CDS

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ctg23, whole genome shotgun sequence
NZ_ABWU01000013
52.3 KB
61 CDS

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ctg172, whole genome shotgun sequence
NZ_ABWU01000014
48.0 KB
51 CDS

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ctg135, whole genome shotgun sequence
NZ_ABWU01000015
47.2 KB
32 CDS

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ctg74, whole genome shotgun sequence
NZ_ABWU01000016
28.1 KB
29 CDS

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ctg31, whole genome shotgun sequence
NZ_ABWU01000017
23.2 KB
29 CDS

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ctg103, whole genome shotgun sequence
NZ_ABWU01000018
20.1 KB
29 CDS

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ctg93, whole genome shotgun sequence
NZ_ABWU01000019
18.1 KB
16 CDS

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ctg17, whole genome shotgun sequence
NZ_ABWU01000020
13.7 KB
21 CDS

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ctg141, whole genome shotgun sequence
NZ_ABWU01000021
13.6 KB
18 CDS

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ctg137, whole genome shotgun sequence
NZ_ABWU01000022
12.6 KB
15 CDS

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ctg30, whole genome shotgun sequence
NZ_ABWU01000023
10.1 KB
12 CDS

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ctg139, whole genome shotgun sequence
NZ_ABWU01000024
9.8 KB
15 CDS

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ctg165, whole genome shotgun sequence
NZ_ABWU01000025
8.9 KB
11 CDS

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ctg169, whole genome shotgun sequence
NZ_ABWU01000026
5.1 KB
0 CDS

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ctg27, whole genome shotgun sequence
NZ_ABWU01000027
4.8 KB
6 CDS

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ctg176, whole genome shotgun sequence
NZ_ABWU01000028
3.3 KB
4 CDS

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ctg98, whole genome shotgun sequence
NZ_ABWU01000029
2.8 KB
1 CDS

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ctg99, whole genome shotgun sequence
NZ_ABWU01000030
986 bytes
1 CDS

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Taxonomy

External Links

Streptococcus pneumoniae SP-BS293

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Sequences

PubMed Search for Streptococcus pneumoniae SP-BS293

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