Streptococcus pneumoniae SP14-BS292

Allegheny-Singer Research Institute (ASRI)

Genome Size: 2.1 megabases, Released Date: Aug. 12, 2010 #20717

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

ctg65, whole genome shotgun sequence
NZ_ABWQ01000001
326.3 KB
396 CDS

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ctg125, whole genome shotgun sequence
NZ_ABWQ01000002
268.7 KB
305 CDS

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ctg72, whole genome shotgun sequence
NZ_ABWQ01000003
225.6 KB
247 CDS

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ctg150, whole genome shotgun sequence
NZ_ABWQ01000004
218.8 KB
248 CDS

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ctg73, whole genome shotgun sequence
NZ_ABWQ01000005
194.5 KB
193 CDS

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ctg53, whole genome shotgun sequence
NZ_ABWQ01000006
99.9 KB
122 CDS

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ctg121, whole genome shotgun sequence
NZ_ABWQ01000007
91.2 KB
100 CDS

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ctg154, whole genome shotgun sequence
NZ_ABWQ01000008
77.8 KB
97 CDS

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ctg145, whole genome shotgun sequence
NZ_ABWQ01000009
73.5 KB
84 CDS

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ctg32, whole genome shotgun sequence
NZ_ABWQ01000010
68.7 KB
75 CDS

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ctg136, whole genome shotgun sequence
NZ_ABWQ01000011
58.5 KB
47 CDS

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ctg67, whole genome shotgun sequence
NZ_ABWQ01000012
56.2 KB
61 CDS

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ctg23, whole genome shotgun sequence
NZ_ABWQ01000013
52.3 KB
61 CDS

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ctg110, whole genome shotgun sequence
NZ_ABWQ01000014
47.8 KB
52 CDS

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ctg101, whole genome shotgun sequence
NZ_ABWQ01000015
45.6 KB
52 CDS

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ctg102, whole genome shotgun sequence
NZ_ABWQ01000016
33.3 KB
32 CDS

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ctg87, whole genome shotgun sequence
NZ_ABWQ01000017
28.1 KB
30 CDS

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ctg143, whole genome shotgun sequence
NZ_ABWQ01000018
23.7 KB
32 CDS

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ctg30, whole genome shotgun sequence
NZ_ABWQ01000019
23.2 KB
29 CDS

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ctg78, whole genome shotgun sequence
NZ_ABWQ01000020
12.9 KB
16 CDS

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ctg156, whole genome shotgun sequence
NZ_ABWQ01000021
10.5 KB
13 CDS

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ctg155, whole genome shotgun sequence
NZ_ABWQ01000022
5.2 KB
0 CDS

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ctg152, whole genome shotgun sequence
NZ_ABWQ01000023
4.9 KB
6 CDS

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ctg33, whole genome shotgun sequence
NZ_ABWQ01000024
3.3 KB
4 CDS

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ctg51, whole genome shotgun sequence
NZ_ABWQ01000025
715 bytes
0 CDS

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Taxonomy

External Links

Streptococcus pneumoniae SP14-BS292

Search Genome

Sequences

PubMed Search for Streptococcus pneumoniae SP14-BS292

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