Streptococcus pneumoniae SP18-BS74

Allegheny-Singer Research Institute (ASRI)

GC Content: 39.7%, Released Date: May 18, 2007 #18450

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABAE01000001
249.9 KB
275 CDS

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whole genome shotgun sequence
NZ_ABAE01000002
244.1 KB
298 CDS

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whole genome shotgun sequence
NZ_ABAE01000003
230.5 KB
263 CDS

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whole genome shotgun sequence
NZ_ABAE01000004
173.1 KB
202 CDS

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whole genome shotgun sequence
NZ_ABAE01000005
143.7 KB
167 CDS

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whole genome shotgun sequence
NZ_ABAE01000006
131.8 KB
141 CDS

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whole genome shotgun sequence
NZ_ABAE01000007
117.3 KB
143 CDS

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whole genome shotgun sequence
NZ_ABAE01000008
97.7 KB
117 CDS

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whole genome shotgun sequence
NZ_ABAE01000009
92.0 KB
110 CDS

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whole genome shotgun sequence
NZ_ABAE01000010
84.0 KB
106 CDS

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whole genome shotgun sequence
NZ_ABAE01000011
80.2 KB
98 CDS

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whole genome shotgun sequence
NZ_ABAE01000012
68.0 KB
87 CDS

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whole genome shotgun sequence
NZ_ABAE01000013
61.6 KB
64 CDS

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whole genome shotgun sequence
NZ_ABAE01000014
60.5 KB
67 CDS

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whole genome shotgun sequence
NZ_ABAE01000015
39.8 KB
46 CDS

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whole genome shotgun sequence
NZ_ABAE01000016
38.5 KB
48 CDS

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whole genome shotgun sequence
NZ_ABAE01000017
38.2 KB
41 CDS

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whole genome shotgun sequence
NZ_ABAE01000018
36.5 KB
53 CDS

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whole genome shotgun sequence
NZ_ABAE01000019
23.9 KB
31 CDS

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whole genome shotgun sequence
NZ_ABAE01000020
19.9 KB
23 CDS

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whole genome shotgun sequence
NZ_ABAE01000021
14.3 KB
20 CDS

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whole genome shotgun sequence
NZ_ABAE01000022
2.6 KB
6 CDS

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whole genome shotgun sequence
NZ_ABAE01000023
2.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABAE01000024
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABAE01000025
842 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABAE01000026
695 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABAE01000027
684 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABAE01000028
626 bytes
2 CDS

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Taxonomy

External Links

Streptococcus pneumoniae SP18-BS74

Search Genome

Sequences

PubMed Search for Streptococcus pneumoniae SP18-BS74

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