Streptococcus pneumoniae SP195

J. Craig Venter Institute

GC Content: 39.7%, Released Date: Oct. 9, 2007 #18452

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABGE01000001
383.4 KB
342 CDS

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whole genome shotgun sequence
NZ_ABGE01000002
298.2 KB
303 CDS

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whole genome shotgun sequence
NZ_ABGE01000003
295.6 KB
246 CDS

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whole genome shotgun sequence
NZ_ABGE01000004
211.7 KB
191 CDS

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whole genome shotgun sequence
NZ_ABGE01000005
142.9 KB
137 CDS

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whole genome shotgun sequence
NZ_ABGE01000006
136.0 KB
133 CDS

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whole genome shotgun sequence
NZ_ABGE01000007
132.1 KB
123 CDS

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whole genome shotgun sequence
NZ_ABGE01000008
80.4 KB
68 CDS

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whole genome shotgun sequence
NZ_ABGE01000009
60.1 KB
53 CDS

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whole genome shotgun sequence
NZ_ABGE01000010
51.8 KB
44 CDS

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whole genome shotgun sequence
NZ_ABGE01000011
48.8 KB
40 CDS

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whole genome shotgun sequence
NZ_ABGE01000012
47.9 KB
42 CDS

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whole genome shotgun sequence
NZ_ABGE01000013
43.3 KB
53 CDS

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whole genome shotgun sequence
NZ_ABGE01000014
43.1 KB
46 CDS

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whole genome shotgun sequence
NZ_ABGE01000015
42.9 KB
42 CDS

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whole genome shotgun sequence
NZ_ABGE01000016
39.9 KB
30 CDS

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whole genome shotgun sequence
NZ_ABGE01000017
22.1 KB
14 CDS

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whole genome shotgun sequence
NZ_ABGE01000018
19.3 KB
19 CDS

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whole genome shotgun sequence
NZ_ABGE01000019
15.4 KB
13 CDS

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whole genome shotgun sequence
NZ_ABGE01000020
5.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000021
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ABGE01000022
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000023
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABGE01000024
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000025
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000026
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000027
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000028
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000029
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000030
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000031
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000032
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000033
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000034
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000035
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABGE01000036
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000037
1018 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000038
970 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABGE01000039
925 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000040
858 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABGE01000041
437 bytes
1 CDS

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Taxonomy

External Links

Streptococcus pneumoniae SP195

Search Genome

Sequences

PubMed Search for Streptococcus pneumoniae SP195

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