Streptococcus pyogenes MGAS2096

Lab of Human Bacterial Pathogenesis , Rocky Mountain Laboratories, National Institute of Allergy and Infectious Disease, National Institutes of Health, Laboratory of Human Bacterial Pathogenesis, USA, Hamilton

Genome Size: 1.9 megabases, GC Content: 38.7%, Released Date: May 4, 2006 #17507

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Sequences

complete genome
NC_008023
1.8 MB
1898 CDS

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References

Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus
Beres,S.B., Richter,E.W., Nagiec,M.J., Sumby,P., Porcella,S.F., DeLeo,F.R. and Musser,J.M. Proc. Natl. Acad. Sci. U.S.A. 103 (18), 7059-7064 (2006)
PubMed, PubGet, HubMed

Taxonomy

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Streptococcus pyogenes MGAS2096

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Sequences

References

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