Streptococcus pyogenes MGAS315

Lab of Human Bacterial Pathogenesis

Genome Size: 1.9 megabases, GC Content: 38.6%, Released Date: July 18, 2002 #17508

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_004070
1.8 MB
1865 CDS

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References

Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence
Beres,S.B., Sylva,G.L., Barbian,K.D., Lei,B., Hoff,J.S., Mammarella,N.D., Liu,M.Y., Smoot,J.C., Porcella,S.F., Parkins,L.D., Campbell,D.S., Smith,T.M., McCormick,J.K., Leung,D.Y., Schlievert,P.M. and Musser,J.M. Proc. Natl. Acad. Sci. U.S.A. 99 (15), 10078-10083 (2002)
PubMed, PubGet, HubMed

Taxonomy

External Links

Streptococcus pyogenes MGAS315

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Sequences

References

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