Streptococcus sanguinis ATCC 49296

Baylor College of Medicine

Released Date: Dec. 21, 2010 #20728

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00001, whole genome shotgun sequence
NZ_AEPO01000001
112.7 KB
98 CDS

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contig00002, whole genome shotgun sequence
NZ_AEPO01000002
11.0 KB
13 CDS

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contig00003, whole genome shotgun sequence
NZ_AEPO01000003
5.2 KB
5 CDS

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contig00004, whole genome shotgun sequence
NZ_AEPO01000004
97.2 KB
97 CDS

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contig00005, whole genome shotgun sequence
NZ_AEPO01000005
73.6 KB
90 CDS

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contig00006, whole genome shotgun sequence
NZ_AEPO01000006
79.9 KB
95 CDS

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contig00007, whole genome shotgun sequence
NZ_AEPO01000007
46.2 KB
42 CDS

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contig00008, whole genome shotgun sequence
NZ_AEPO01000008
63.8 KB
58 CDS

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contig00009, whole genome shotgun sequence
NZ_AEPO01000009
111.7 KB
108 CDS

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contig00010, whole genome shotgun sequence
NZ_AEPO01000010
288.8 KB
302 CDS

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contig00011, whole genome shotgun sequence
NZ_AEPO01000011
100.7 KB
90 CDS

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contig00012, whole genome shotgun sequence
NZ_AEPO01000012
381.8 KB
385 CDS

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contig00013, whole genome shotgun sequence
NZ_AEPO01000013
161.2 KB
161 CDS

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contig00014, whole genome shotgun sequence
NZ_AEPO01000014
163.8 KB
164 CDS

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contig00015, whole genome shotgun sequence
NZ_AEPO01000015
85.2 KB
73 CDS

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contig00016, whole genome shotgun sequence
NZ_AEPO01000016
217.1 KB
230 CDS

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contig00017, whole genome shotgun sequence
NZ_AEPO01000017
4.9 KB
0 CDS

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contig00018, whole genome shotgun sequence
NZ_AEPO01000018
712 bytes
0 CDS

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contig00019, whole genome shotgun sequence
NZ_AEPO01000019
653 bytes
1 CDS

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contig00020, whole genome shotgun sequence
NZ_AEPO01000020
607 bytes
1 CDS

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Taxonomy

External Links

Streptococcus sanguinis ATCC 49296

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Sequences

PubMed Search for Streptococcus sanguinis ATCC 49296

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