Streptococcus sp. oral taxon 071 str. 73H25AP

Baylor College of Medicine

Genome Size: 2.0 megabases, Released Date: Aug. 24, 2010 #20731

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00001, whole genome shotgun sequence
NZ_AEEP01000001
896 bytes
1 CDS

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contig00002, whole genome shotgun sequence
NZ_AEEP01000002
712 bytes
0 CDS

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contig00003, whole genome shotgun sequence
NZ_AEEP01000003
1.9 KB
1 CDS

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contig00007, whole genome shotgun sequence
NZ_AEEP01000004
157.5 KB
145 CDS

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contig00008, whole genome shotgun sequence
NZ_AEEP01000005
61.3 KB
72 CDS

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contig00009, whole genome shotgun sequence
NZ_AEEP01000006
278.4 KB
283 CDS

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contig00010, whole genome shotgun sequence
NZ_AEEP01000007
90.0 KB
99 CDS

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contig00011, whole genome shotgun sequence
NZ_AEEP01000008
291.1 KB
290 CDS

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contig00013, whole genome shotgun sequence
NZ_AEEP01000010
173.6 KB
180 CDS

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contig00014, whole genome shotgun sequence
NZ_AEEP01000011
406.4 KB
395 CDS

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contig00015, whole genome shotgun sequence
NZ_AEEP01000012
33.2 KB
32 CDS

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contig00016, whole genome shotgun sequence
NZ_AEEP01000013
10.4 KB
9 CDS

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contig00017, whole genome shotgun sequence
NZ_AEEP01000014
151.1 KB
162 CDS

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contig00018, whole genome shotgun sequence
NZ_AEEP01000015
77.9 KB
76 CDS

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contig00019, whole genome shotgun sequence
NZ_AEEP01000016
123.7 KB
122 CDS

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contig00020, whole genome shotgun sequence
NZ_AEEP01000017
36.5 KB
39 CDS

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contig00033, whole genome shotgun sequence
NZ_AEEP01000018
565 bytes
1 CDS

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contig00037, whole genome shotgun sequence
NZ_AEEP01000019
5.1 KB
0 CDS

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contig00043, whole genome shotgun sequence
NZ_AEEP01000020
3.6 KB
5 CDS

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Taxonomy

External Links

Streptococcus sp. oral taxon 071 str. 73H25AP

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Sequences

PubMed Search for Streptococcus sp. oral taxon 071 str. 73H25AP

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