Streptococcus suis 89/1591

DOE Joint Genome Institute

Genome Size: 1.98 megabases, GC Content: 41.1%, Released Date: July 23, 2004 #18461

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAFA03000001
147.6 KB
163 CDS

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whole genome shotgun sequence
NZ_AAFA03000002
135.3 KB
135 CDS

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whole genome shotgun sequence
NZ_AAFA03000003
96.1 KB
90 CDS

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whole genome shotgun sequence
NZ_AAFA03000004
94.8 KB
91 CDS

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whole genome shotgun sequence
NZ_AAFA03000005
79.8 KB
68 CDS

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whole genome shotgun sequence
NZ_AAFA03000006
78.9 KB
70 CDS

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whole genome shotgun sequence
NZ_AAFA03000007
70.1 KB
65 CDS

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whole genome shotgun sequence
NZ_AAFA03000008
63.8 KB
57 CDS

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whole genome shotgun sequence
NZ_AAFA03000009
62.7 KB
69 CDS

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whole genome shotgun sequence
NZ_AAFA03000010
62.5 KB
64 CDS

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whole genome shotgun sequence
NZ_AAFA03000011
60.6 KB
63 CDS

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whole genome shotgun sequence
NZ_AAFA03000012
56.6 KB
65 CDS

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whole genome shotgun sequence
NZ_AAFA03000013
53.1 KB
59 CDS

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whole genome shotgun sequence
NZ_AAFA03000014
52.5 KB
70 CDS

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whole genome shotgun sequence
NZ_AAFA03000015
46.6 KB
44 CDS

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whole genome shotgun sequence
NZ_AAFA03000016
44.6 KB
38 CDS

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whole genome shotgun sequence
NZ_AAFA03000017
41.2 KB
40 CDS

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whole genome shotgun sequence
NZ_AAFA03000018
39.4 KB
41 CDS

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whole genome shotgun sequence
NZ_AAFA03000019
32.1 KB
30 CDS

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whole genome shotgun sequence
NZ_AAFA03000020
29.6 KB
24 CDS

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whole genome shotgun sequence
NZ_AAFA03000021
28.5 KB
39 CDS

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whole genome shotgun sequence
NZ_AAFA03000022
27.0 KB
25 CDS

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whole genome shotgun sequence
NZ_AAFA03000023
26.0 KB
20 CDS

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whole genome shotgun sequence
NZ_AAFA03000024
25.2 KB
42 CDS

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whole genome shotgun sequence
NZ_AAFA03000025
24.2 KB
26 CDS

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whole genome shotgun sequence
NZ_AAFA03000026
23.2 KB
24 CDS

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whole genome shotgun sequence
NZ_AAFA03000027
19.0 KB
18 CDS

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whole genome shotgun sequence
NZ_AAFA03000028
18.4 KB
17 CDS

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whole genome shotgun sequence
NZ_AAFA03000029
18.4 KB
21 CDS

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whole genome shotgun sequence
NZ_AAFA03000030
18.3 KB
14 CDS

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whole genome shotgun sequence
NZ_AAFA03000031
18.1 KB
19 CDS

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whole genome shotgun sequence
NZ_AAFA03000032
16.5 KB
18 CDS

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whole genome shotgun sequence
NZ_AAFA03000033
16.5 KB
18 CDS

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whole genome shotgun sequence
NZ_AAFA03000034
16.5 KB
16 CDS

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whole genome shotgun sequence
NZ_AAFA03000035
16.5 KB
11 CDS

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whole genome shotgun sequence
NZ_AAFA03000036
16.3 KB
13 CDS

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whole genome shotgun sequence
NZ_AAFA03000037
16.1 KB
15 CDS

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whole genome shotgun sequence
NZ_AAFA03000038
15.2 KB
15 CDS

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whole genome shotgun sequence
NZ_AAFA03000039
15.0 KB
16 CDS

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whole genome shotgun sequence
NZ_AAFA03000040
14.7 KB
11 CDS

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whole genome shotgun sequence
NZ_AAFA03000041
14.7 KB
18 CDS

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whole genome shotgun sequence
NZ_AAFA03000042
14.6 KB
12 CDS

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whole genome shotgun sequence
NZ_AAFA03000043
13.8 KB
10 CDS

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whole genome shotgun sequence
NZ_AAFA03000044
13.3 KB
13 CDS

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whole genome shotgun sequence
NZ_AAFA03000045
12.9 KB
15 CDS

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whole genome shotgun sequence
NZ_AAFA03000046
12.5 KB
11 CDS

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whole genome shotgun sequence
NZ_AAFA03000047
11.2 KB
14 CDS

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whole genome shotgun sequence
NZ_AAFA03000048
11.2 KB
14 CDS

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whole genome shotgun sequence
NZ_AAFA03000049
10.9 KB
9 CDS

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whole genome shotgun sequence
NZ_AAFA03000050
10.8 KB
12 CDS

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whole genome shotgun sequence
NZ_AAFA03000051
10.8 KB
11 CDS

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whole genome shotgun sequence
NZ_AAFA03000052
10.5 KB
19 CDS

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whole genome shotgun sequence
NZ_AAFA03000053
10.2 KB
9 CDS

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whole genome shotgun sequence
NZ_AAFA03000054
9.9 KB
7 CDS

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whole genome shotgun sequence
NZ_AAFA03000055
9.8 KB
9 CDS

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whole genome shotgun sequence
NZ_AAFA03000056
9.7 KB
10 CDS

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whole genome shotgun sequence
NZ_AAFA03000057
9.7 KB
12 CDS

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whole genome shotgun sequence
NZ_AAFA03000058
9.3 KB
6 CDS

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whole genome shotgun sequence
NZ_AAFA03000059
9.1 KB
9 CDS

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whole genome shotgun sequence
NZ_AAFA03000060
8.4 KB
12 CDS

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whole genome shotgun sequence
NZ_AAFA03000061
8.3 KB
10 CDS

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whole genome shotgun sequence
NZ_AAFA03000062
8.3 KB
9 CDS

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whole genome shotgun sequence
NZ_AAFA03000063
8.3 KB
8 CDS

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whole genome shotgun sequence
NZ_AAFA03000064
7.7 KB
6 CDS

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whole genome shotgun sequence
NZ_AAFA03000065
7.7 KB
7 CDS

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whole genome shotgun sequence
NZ_AAFA03000066
7.4 KB
10 CDS

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whole genome shotgun sequence
NZ_AAFA03000067
7.2 KB
5 CDS

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whole genome shotgun sequence
NZ_AAFA03000068
7.1 KB
10 CDS

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whole genome shotgun sequence
NZ_AAFA03000069
7.0 KB
10 CDS

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whole genome shotgun sequence
NZ_AAFA03000070
6.9 KB
7 CDS

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whole genome shotgun sequence
NZ_AAFA03000071
6.6 KB
7 CDS

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whole genome shotgun sequence
NZ_AAFA03000072
6.0 KB
6 CDS

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whole genome shotgun sequence
NZ_AAFA03000073
5.9 KB
5 CDS

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whole genome shotgun sequence
NZ_AAFA03000074
5.6 KB
3 CDS

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whole genome shotgun sequence
NZ_AAFA03000075
5.5 KB
7 CDS

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whole genome shotgun sequence
NZ_AAFA03000076
4.6 KB
8 CDS

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whole genome shotgun sequence
NZ_AAFA03000077
4.5 KB
5 CDS

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whole genome shotgun sequence
NZ_AAFA03000078
4.0 KB
6 CDS

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whole genome shotgun sequence
NZ_AAFA03000079
4.0 KB
3 CDS

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whole genome shotgun sequence
NZ_AAFA03000080
3.6 KB
4 CDS

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whole genome shotgun sequence
NZ_AAFA03000081
3.4 KB
4 CDS

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whole genome shotgun sequence
NZ_AAFA03000082
2.7 KB
3 CDS

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Taxonomy

External Links

Streptococcus suis 89/1591

Search Genome

Sequences

PubMed Search for Streptococcus suis 89/1591

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