Streptomyces avermitilis MA-4680

NITE

Genome Size: 9.09 megabases, GC Content: 70.7%, Released Date: Sept. 27, 2001 #17526

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis
  Ikeda,H., Ishikawa,J., Hanamoto,A., Shinose,M., Kikuchi,H., Shiba,T., Sakaki,Y., Hattori,M. and Omura,S. Nat. Biotechnol. 21 (5), 526-531 (2003)
  PubMed, PubGet, HubMed
• Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites
  Omura,S., Ikeda,H., Ishikawa,J., Hanamoto,A., Takahashi,C., Shinose,M., Takahashi,Y., Horikawa,H., Nakazawa,H., Osonoe,T., Kikuchi,H., Shiba,T., Sakaki,Y. and Hattori,M. Proc. Natl. Acad. Sci. U.S.A. 98 (21), 12215-12220 (2001)
  PubMed, PubGet, HubMed

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