Streptomyces bingchenggensis BCW-1

Northeast Agricultural University , Beijing Genomics Institute

Genome Size: 12.0 megabases, Released Date: May 28, 2010 #20056

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP002047
11.4 MB
10022 CDS

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References

Genome Sequence of the Milbemycin-Producing Bacterium Streptomyces bingchenggensis
Wang,X.J., Yan,Y.J., Zhang,B., An,J., Wang,J.J., Tian,J., Jiang,L., Chen,Y.H., Huang,S.X., Yin,M., Zhang,J., Gao,A.L., Liu,C.X., Zhu,Z.X. and Xiang,W.S. J. Bacteriol. 192 (17), 4526-4527 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Streptomyces bingchenggensis BCW-1

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Sequences

References

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