Streptomyces griseus subsp. griseus NBRC 13350

University of Tokyo, Japan

Genome Size: 8.5 megabases, GC Content: 72.2%, Released Date: April 8, 2008 #17528

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350
  Ohnishi,Y., Ishikawa,J., Hara,H., Suzuki,H., Ikenoya,M., Ikeda,H., Yamashita,A., Hattori,M. and Horinouchi,S. J. Bacteriol. 190 (11), 4050-4060 (2008)
  PubMed, PubGet, HubMed
• Phenolic lipids synthesized by type III polyketide synthase confer penicillin resistance on Streptomyces griseus
  Funabashi,M., Funa,N. and Horinouchi,S. J. Biol. Chem. 283 (20), 13983-13991 (2008)
  PubMed, PubGet, HubMed
• Conditionally positive effect of the TetR-family transcriptional regulator AtrA on streptomycin production by Streptomyces griseus
  Hirano,S., Tanaka,K., Ohnishi,Y. and Horinouchi,S. Microbiology (Reading, Engl.) 154 (PT 3), 905-914 (2008)
  PubMed, PubGet, HubMed

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