Sulfolobus acidocaldarius DSM 639

University of Copenhagen

Genome Size: 2.23 megabases, GC Content: 36.7%, Released Date: July 5, 2005 #17530

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_007181
2.1 MB
2223 CDS

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References

The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota
Chen,L., Brugger,K., Skovgaard,M., Redder,P., She,Q., Torarinsson,E., Greve,B., Awayez,M., Zibat,A., Klenk,H.-P. and Garrett,R.A. J. Bacteriol. 187 (14), 4992-4999 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Sulfolobus acidocaldarius DSM 639

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Sequences

References

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