Sulfolobus islandicus M.16.4

DOE Joint Genome Institute

Genome Size: 2.6 megabases, GC Content: 35.0%, Released Date: May 27, 2009 #17535

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_012726
2.5 MB
2735 CDS

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References

Biogeography of the Sulfolobus islandicus pan-genome
Reno,M.L., Held,N.L., Fields,C.J., Burke,P.V. and Whitaker,R.J. Proc. Natl. Acad. Sci. U.S.A. 106 (21), 8605-8610 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Sulfolobus islandicus M.16.4

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Sequences

References

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