Symbiobacterium thermophilum IAM 14863

Kitasato Univ.

Genome Size: 3.6 megabases, GC Content: 68.7%, Released Date: Sept. 24, 2004 #17545

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_006177
3.4 MB
3338 CDS

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References

Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism
Ueda,K., Yamashita,A., Ishikawa,J., Shimada,M., Watsuji,T.O., Morimura,K., Ikeda,H., Hattori,M. and Beppu,T. Nucleic Acids Res. 32 (16), 4937-4944 (2004)
PubMed, PubGet, HubMed

Taxonomy

External Links

Symbiobacterium thermophilum IAM 14863

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Sequences

References

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