Synechococcus sp. JA-2-3B'a(2-13)

TIGR

Genome Size: 3.0 megabases, GC Content: 58.5%, Released Date: Feb. 6, 2006 #17551

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

complete genome
NC_007776
2.9 MB
2862 CDS

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References

Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses
Bhaya,D., Grossman,A.R., Steunou,A.S., Khuri,N., Cohan,F.M., Hamamura,N., Melendrez,M.C., Bateson,M.M., Ward,D.M. and Heidelberg,J.F. ISME J 1 (8), 703-713 (2007)
PubMed, PubGet, HubMed
Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park
Allewalt,J.P., Bateson,M.M., Revsbech,N.P., Slack,K. and Ward,D.M. Appl. Environ. Microbiol. 72 (1), 544-550 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Synechococcus sp. JA-2-3B'a(2-13)

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Sequences

References

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