Thermoanaerobacter sp. X561

DOE Joint Genome Institute

Released Date: Aug. 21, 2009 #18489

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACXP01000001
215.1 KB
253 CDS

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whole genome shotgun sequence
NZ_ACXP01000002
141.0 KB
127 CDS

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whole genome shotgun sequence
NZ_ACXP01000003
125.5 KB
141 CDS

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whole genome shotgun sequence
NZ_ACXP01000004
122.0 KB
130 CDS

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whole genome shotgun sequence
NZ_ACXP01000005
102.4 KB
112 CDS

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whole genome shotgun sequence
NZ_ACXP01000006
91.6 KB
87 CDS

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whole genome shotgun sequence
NZ_ACXP01000007
86.7 KB
76 CDS

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whole genome shotgun sequence
NZ_ACXP01000008
76.6 KB
77 CDS

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whole genome shotgun sequence
NZ_ACXP01000009
73.1 KB
78 CDS

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whole genome shotgun sequence
NZ_ACXP01000010
63.6 KB
69 CDS

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whole genome shotgun sequence
NZ_ACXP01000011
59.9 KB
61 CDS

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whole genome shotgun sequence
NZ_ACXP01000012
58.3 KB
44 CDS

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whole genome shotgun sequence
NZ_ACXP01000013
55.1 KB
57 CDS

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whole genome shotgun sequence
NZ_ACXP01000014
50.2 KB
47 CDS

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whole genome shotgun sequence
NZ_ACXP01000015
46.1 KB
47 CDS

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whole genome shotgun sequence
NZ_ACXP01000016
43.6 KB
43 CDS

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whole genome shotgun sequence
NZ_ACXP01000017
43.0 KB
44 CDS

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whole genome shotgun sequence
NZ_ACXP01000018
41.7 KB
46 CDS

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whole genome shotgun sequence
NZ_ACXP01000019
40.3 KB
38 CDS

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whole genome shotgun sequence
NZ_ACXP01000020
37.8 KB
47 CDS

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whole genome shotgun sequence
NZ_ACXP01000021
34.8 KB
32 CDS

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whole genome shotgun sequence
NZ_ACXP01000022
30.5 KB
35 CDS

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whole genome shotgun sequence
NZ_ACXP01000023
29.1 KB
31 CDS

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whole genome shotgun sequence
NZ_ACXP01000024
28.4 KB
25 CDS

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whole genome shotgun sequence
NZ_ACXP01000025
28.2 KB
35 CDS

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whole genome shotgun sequence
NZ_ACXP01000026
27.6 KB
29 CDS

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whole genome shotgun sequence
NZ_ACXP01000027
26.2 KB
28 CDS

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whole genome shotgun sequence
NZ_ACXP01000028
26.1 KB
20 CDS

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whole genome shotgun sequence
NZ_ACXP01000029
25.9 KB
27 CDS

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whole genome shotgun sequence
NZ_ACXP01000030
24.5 KB
23 CDS

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whole genome shotgun sequence
NZ_ACXP01000031
24.4 KB
28 CDS

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whole genome shotgun sequence
NZ_ACXP01000032
23.7 KB
23 CDS

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whole genome shotgun sequence
NZ_ACXP01000033
23.6 KB
29 CDS

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whole genome shotgun sequence
NZ_ACXP01000034
22.0 KB
23 CDS

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whole genome shotgun sequence
NZ_ACXP01000035
20.9 KB
16 CDS

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whole genome shotgun sequence
NZ_ACXP01000036
20.5 KB
22 CDS

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whole genome shotgun sequence
NZ_ACXP01000037
20.3 KB
22 CDS

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whole genome shotgun sequence
NZ_ACXP01000038
19.8 KB
24 CDS

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whole genome shotgun sequence
NZ_ACXP01000039
19.3 KB
38 CDS

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whole genome shotgun sequence
NZ_ACXP01000040
18.7 KB
24 CDS

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whole genome shotgun sequence
NZ_ACXP01000041
16.5 KB
12 CDS

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whole genome shotgun sequence
NZ_ACXP01000042
16.0 KB
16 CDS

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whole genome shotgun sequence
NZ_ACXP01000043
14.7 KB
16 CDS

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whole genome shotgun sequence
NZ_ACXP01000044
14.6 KB
18 CDS

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whole genome shotgun sequence
NZ_ACXP01000045
14.4 KB
11 CDS

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whole genome shotgun sequence
NZ_ACXP01000046
14.4 KB
14 CDS

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whole genome shotgun sequence
NZ_ACXP01000047
14.1 KB
17 CDS

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whole genome shotgun sequence
NZ_ACXP01000048
13.1 KB
15 CDS

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whole genome shotgun sequence
NZ_ACXP01000049
12.6 KB
15 CDS

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whole genome shotgun sequence
NZ_ACXP01000050
12.4 KB
14 CDS

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whole genome shotgun sequence
NZ_ACXP01000051
10.7 KB
10 CDS

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whole genome shotgun sequence
NZ_ACXP01000052
9.5 KB
10 CDS

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whole genome shotgun sequence
NZ_ACXP01000053
8.2 KB
9 CDS

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whole genome shotgun sequence
NZ_ACXP01000054
8.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ACXP01000055
7.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ACXP01000056
6.6 KB
8 CDS

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whole genome shotgun sequence
NZ_ACXP01000057
6.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ACXP01000058
4.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ACXP01000059
4.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ACXP01000060
4.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ACXP01000061
3.8 KB
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000062
3.7 KB
6 CDS

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whole genome shotgun sequence
NZ_ACXP01000063
2.8 KB
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000064
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ACXP01000065
2.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ACXP01000066
2.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ACXP01000067
2.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000068
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACXP01000069
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ACXP01000070
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ACXP01000071
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000072
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ACXP01000073
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ACXP01000074
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ACXP01000075
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000076
1.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACXP01000077
914 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000078
842 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000079
837 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000080
708 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACXP01000081
704 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACXP01000082
674 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000083
653 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000084
653 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000085
591 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000086
582 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACXP01000087
561 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000088
521 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACXP01000089
502 bytes
1 CDS

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Taxonomy

External Links

Thermoanaerobacter sp. X561

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Sequences

PubMed Search for Thermoanaerobacter sp. X561

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